Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from rhesus macaque brain (MetaCumulative)

Program

bican

Collection Type

Dynamic

Keywords

Rapid Release

As part of the BRAIN Initiative Cell Atlas Network, single nuclei from rhesus monkey were assayed using the 10X Genomics Multiome platform.

Data citation: No data citation listed
Funding agency: NIMH
Grant numbers: UM1MH130981
Access: open
License: No license listed

Download URLs

Browse HTTP server https://data.nemoarchive.org/bican/grant/HMBA/aibs/multimodal/nuclei/10xMultiome_ATACseq/rhesus_macaque/demultiplexed_fastq

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Browse HTTP server https://data.nemoarchive.org/bican/grant/HMBA/aibs/multimodal/nuclei/10xMultiome_RNAseq/rhesus_macaque/demultiplexed_fastq

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Anatomical Regions

ventral group of lateral nucleus
mediodorsal nucleus of thalamus
septal nuclei
islands of Calleja
shell of nucleus accumbens
core of nucleus accumbens
lateral nuclear complex of thalamus
hindbrain (rhombencephalon)
Ventral pallidus
basal nucleus of Meynert
olfactory tubercle
anterior amygdaloid area
lateral hemisphere, anterior lobe portion
vermis, flocculonodular lobe portion (nodulus)
presubicular cortex (presubiculum)
inferior olive
head of caudate
tail of caudate
basolateral nuclear group
superior colliculus
posteroventral putamen
intralaminar nuclear complex
hypothalamus
lateral hemisphere, posterior lobe portion
subicular cortex
midbrain (mesencephalon)
dentate area (dentate gyrus)
external segment of globus pallidus
body of caudate
pulvinar of thalamus
reticular nucleus of thalamus
corticomedial nuclear group
posterior nuclear complex of thalamus
bed nucleus of stria terminalis
subiculum
lateral nucleus
subgenual (subcallosal) division of MFC (area 25)
hippocampal proper
laterodorsal portion of STH
paravermis, anterior lobe portion
primary visual cortex (striate cortex, area V1/17)
cerebellar deep nuclei
vermis, anterior lobe portion
putamen
internal segment of globus pallidus
posterior group of intralaminar nuclei
medial geniculate nuclei
pyramidal part of medulla oblongata
anterior nuclear complex of thalamus
lateral hemisphere, flocculonodular lobe portion
paravermis, posterior lobe portion
lateroventral portion of STH
lateral geniculate nucleus
entorhinal cortex
pons
fastigial (medial) nucleus
amygdaloid complex
central lateral nucleus of the thalamus
medial nuclear complex of thalamus
amygdalohippocampal transition area
substantia innominata
dentate (lateral) nucleus
myelencephalon (medulla oblongata)
substantia nigra, reticular part
vermis, posterior lobe portion

Taxa

rhesus macaque

Projects this collection belongs to

nemo:prj-t8d9ty5

Functionally guided adult whole brain cell atlas in human and NHP

Assays, Modalities & Techniques

Assays: multiome; chromatin multiome; transcriptome
Modalities: multimodal
Techniques: 10X genomics multiome;atac-seq 10X genomics multiome;rnaseq

Child collections

nemo:col-pero103

Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from rhesus macaque brain (BICAN-2024-09-RR-SCO MetaSnapshot)
nemo:col-3kyvdj3

Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from rhesus macaque brain (BICAN-2026-01-RR-SCO MetaSnapshot)
nemo:col-u7mdy48

BICAN__MetaSnapshot__2026-09-25__HMBA__aibs__nuclei__10X_genomics_multiome__rhesus_macaque__demultiplexed_fastq__open__no_restriction

Parent collections

No parent collections listed for Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from rhesus macaque brain (MetaCumulative) collection.

Associated publications

No publications linked yet.

URL Protocols

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Contributors

No contributors listed for Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from rhesus macaque brain (MetaCumulative) collection.

Cross-archive links

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