NeMO Identifier: Collection

NeMO ID: nemo:col-q2n8xrh

  • Collection Name: BICAN__Snapshot__2025-08-12__HMBA__aibs__nuclei__10xMultiome_ATACseq__pig-tailed_macaque__demultiplexed_fastq__coh-8boto7m__no_restriction
  • Short Name: BICAN__Snapshot__2025-08-12__HMBA__aibs__nuclei__10xMultiome_ATACseq__pig-tailed_macaque__demultiplexed_fastq__coh-8boto7m__no_restriction
  • Programs: bican

COLLECTION METADATA

  • Description:
  • Collection Type: Static
  • Taxa: pig-tailed macaque
  • Assays: multiome; chromatin
  • Anatomical Regions: substantia nigra , head of caudate , rostral putamen , tail of caudate , caudal putamen , subthalamic nucleus , nucleus accumbens , spinal cord , external segment of globus pallidus , posteroventral putamen , body of caudate , internal segment of globus pallidus
  • Modalities: multimodal
  • Techniques: 10X genomics multiome;atac-seq
  • Specimen Type: nuclei
  • Keywords:
  • Contact:
  • Grant Numbers: UM1MH130981
  • Funding Agency: NIMH
  • URL Protocol:
  • Data Access: open

Project(s) this Collection Belongs To

ID Title
nemo:prj-t8d9ty5 Functionally guided adult whole brain cell atlas in human and NHP

Brain Region(s) of Interest

Name
substantia nigra
head of caudate
rostral putamen
tail of caudate
caudal putamen
subthalamic nucleus
nucleus accumbens
spinal cord
external segment of globus pallidus
posteroventral putamen
body of caudate
internal segment of globus pallidus

Parent Collections

Collection ID Name Type Short Name Submission Status
nemo:col-8shaeh2 BICAN__MetaSnapshot__2025-08-12__HMBA__aibs__nuclei__10X_genomics_multiome__pig-tailed_macaque__demultiplexed_fastq__coh-8boto7m__no_restriction collection BICAN__MetaSnapshot__2025-08-12__HMBA__aibs__nuclei__10X_genomics_multiome__pig-tailed_macaque__demultiplexed_fastq__coh-8boto7m__no_restriction

Documentation


Data Citation:

Dataset: Trygve Bakken, Rebecca Hodge, Aaron Garcia, Matthew Schmitz, Morgan Wirthlin, Beagan Nguy, Anish Bhaswanth Chakka, Jeff Goldy, Rushil Chakrabarty, Michael Tieu, Darren Bertagnolli, Kimberly A. Smith, Amy Torkelson, Katelyn James, Junitta Guzman, Rebecca Ferrer, Trangthanh Pham, Tamara Casper, Windy Ho, Cassandra Sobieski, Boaz P. Levi, Nadiya V. Shapovalova, Daniel Hirschstein, Nicholas Peña, Danielle L. Jones, Lauren Kruse, Jessie Puckett, Hongkui Zeng, Ed Lein (2024) Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from pig-tailed macaque brain [Dataset]. Available from: https://assets.nemoarchive.org/col-8shaeh2.

NeMO Citation:

Ament SA, Adkins RS, Carter R, Chrysostomou E, Colantuoni C, Crabtree J, Creasy HH, Degatano K, Felix V, Gandt P, Garden GA, Giglio M, Herb BR, Khajouei F, Kiernan E, McCracken C, McDaniel K, Nadendla S, Nickel L, Olley D, Orvis J, Receveur JP, Schor M, Sonthalia S, Tickle TL, Way J, Hertzano R, Mahurkar AA, White OR. The Neuroscience Multi-Omic Archive: a BRAIN Initiative resource for single-cell transcriptomic and epigenomic data from the mammalian brain. Nucleic Acids Res. 2023 Jan 6;51(D1):D1075-D1085. doi: 10.1093/nar/gkac962. PMID: 36318260; PMCID: PMC9825473