NeMO Identifier: Collection

NeMO ID: nemo:col-rpsij5k

  • Collection Name: BICAN__Snapshot__2025-08-12__HMBA__aibs__nuclei__10xMultiome_RNAseq__rhesus_macaque__demultiplexed_fastq__coh-8boto7m__no_restriction
  • Short Name: BICAN__Snapshot__2025-08-12__HMBA__aibs__nuclei__10xMultiome_RNAseq__rhesus_macaque__demultiplexed_fastq__coh-8boto7m__no_restriction
  • Programs: bican

COLLECTION METADATA

  • Description:
  • Collection Type: Static
  • Taxa: rhesus macaque
  • Assays: multiome; transcriptome
  • Anatomical Regions: ventral group of lateral nucleus , pulvinar of thalamus , reticular nucleus of thalamus , corticomedial nuclear group , caudate nucleus , posterior nuclear complex of thalamus , caudal putamen , mediodorsal nucleus of thalamus , septal nuclei , islands of Calleja , bed nucleus of stria terminalis , subiculum , lateral nucleus , subgenual (subcallosal) division of MFC (area 25) , lateral nuclear complex of thalamus , hindbrain (rhombencephalon) , Ventral pallidus , hippocampal proper , substantia nigra , basal nucleus of Meynert , paravermis, anterior lobe portion , olfactory tubercle , anterior amygdaloid area , subthalamic nucleus , primary visual cortex (striate cortex, area V1/17) , cerebellar deep nuclei , vermis, anterior lobe portion , putamen , medial geniculate nuclei , internal segment of globus pallidus , vermis, flocculonodular lobe portion (nodulus) , presubicular cortex (presubiculum) , posterior group of intralaminar nuclei , lateral hemisphere, anterior lobe portion , inferior olive , pyramidal part of medulla oblongata , head of caudate , tail of caudate , anterior nuclear complex of thalamus , basolateral nuclear group , lateral hemisphere, flocculonodular lobe portion , globus pallidus , superior colliculus , posteroventral putamen , paravermis, posterior lobe portion , intralaminar nuclear complex , hypothalamus , lateral hemisphere, posterior lobe portion , lateral geniculate nucleus , pons , subicular cortex , entorhinal cortex , rostral putamen , amygdaloid complex , fastigial (medial) nucleus , dentate area (dentate gyrus) , midbrain (mesencephalon) , central lateral nucleus of the thalamus , medial nuclear complex of thalamus , nucleus accumbens , amygdalohippocampal transition area , dentate (lateral) nucleus , myelencephalon (medulla oblongata) , external segment of globus pallidus , body of caudate , vermis, posterior lobe portion
  • Modalities: multimodal
  • Techniques: 10X genomics multiome;rnaseq
  • Specimen Type: nuclei
  • Keywords:
  • Contact:
  • Grant Numbers: UM1MH130981
  • Funding Agency: NIMH
  • URL Protocol:
  • Data Access: open

Project(s) this Collection Belongs To

ID Title
nemo:prj-t8d9ty5 Functionally guided adult whole brain cell atlas in human and NHP

Brain Region(s) of Interest

Name
ventral group of lateral nucleus
pulvinar of thalamus
reticular nucleus of thalamus
corticomedial nuclear group
caudate nucleus
posterior nuclear complex of thalamus
caudal putamen
mediodorsal nucleus of thalamus
septal nuclei
islands of Calleja
bed nucleus of stria terminalis
subiculum
lateral nucleus
subgenual (subcallosal) division of MFC (area 25)
lateral nuclear complex of thalamus
hindbrain (rhombencephalon)
Ventral pallidus
hippocampal proper
substantia nigra
basal nucleus of Meynert
paravermis, anterior lobe portion
olfactory tubercle
anterior amygdaloid area
subthalamic nucleus
primary visual cortex (striate cortex, area V1/17)
cerebellar deep nuclei
vermis, anterior lobe portion
putamen
medial geniculate nuclei
internal segment of globus pallidus
vermis, flocculonodular lobe portion (nodulus)
presubicular cortex (presubiculum)
posterior group of intralaminar nuclei
lateral hemisphere, anterior lobe portion
inferior olive
pyramidal part of medulla oblongata
head of caudate
tail of caudate
anterior nuclear complex of thalamus
basolateral nuclear group
lateral hemisphere, flocculonodular lobe portion
globus pallidus
superior colliculus
posteroventral putamen
paravermis, posterior lobe portion
intralaminar nuclear complex
hypothalamus
lateral hemisphere, posterior lobe portion
lateral geniculate nucleus
pons
subicular cortex
entorhinal cortex
rostral putamen
amygdaloid complex
fastigial (medial) nucleus
dentate area (dentate gyrus)
midbrain (mesencephalon)
central lateral nucleus of the thalamus
medial nuclear complex of thalamus
nucleus accumbens
amygdalohippocampal transition area
dentate (lateral) nucleus
myelencephalon (medulla oblongata)
external segment of globus pallidus
body of caudate
vermis, posterior lobe portion

Parent Collections

Collection ID Name Type Short Name Submission Status
nemo:col-ynb19oi BICAN__MetaSnapshot__2025-08-12__HMBA__aibs__nuclei__10X_genomics_multiome__rhesus_macaque__demultiplexed_fastq__coh-8boto7m__no_restriction collection BICAN__MetaSnapshot__2025-08-12__HMBA__aibs__nuclei__10X_genomics_multiome__rhesus_macaque__demultiplexed_fastq__coh-8boto7m__no_restriction

Documentation


Data Citation:

Dataset: Trygve Bakken, Darren Bertagnolli, Tamara Casper, Anish Bhaswanth Chakka, Rushil Chakrabarty, Michael Clark, Nick Dee, Rebecca Ferrer, Yuanyuan Fu, Aaron Garcia, Jessica Gloe, Jeff Goldy, Junitta Guzman, Daniel Hirschstein, Windy Ho, Rebecca Hodge, Katelyn James, Nelson Johansen, Danielle L. Jones, Kathryn Jordan, Matthew Jungert, Madhav Kannan, Inkar Kapen, Lauren Kruse, Changkyu Lee, Boaz P. Levi, Rachel McCue, Beagan Nguy, Nicholas Peña, Trangthanh Pham, Elliot Phillips, Nadiya V. Shapovalova, Kimberly A. Smith, Cassandra Sobieski, Michael Tieu, Amy Torkelson, Alex Tran, Jingyi Xie, Zizhen Yao, Dan Yuan, Hongkui Zeng, Ed Lein (2024) Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from rhesus macaque brain [Dataset]. Available from: https://assets.nemoarchive.org/col-ynb19oi.

NeMO Citation:

Ament SA, Adkins RS, Carter R, Chrysostomou E, Colantuoni C, Crabtree J, Creasy HH, Degatano K, Felix V, Gandt P, Garden GA, Giglio M, Herb BR, Khajouei F, Kiernan E, McCracken C, McDaniel K, Nadendla S, Nickel L, Olley D, Orvis J, Receveur JP, Schor M, Sonthalia S, Tickle TL, Way J, Hertzano R, Mahurkar AA, White OR. The Neuroscience Multi-Omic Archive: a BRAIN Initiative resource for single-cell transcriptomic and epigenomic data from the mammalian brain. Nucleic Acids Res. 2023 Jan 6;51(D1):D1075-D1085. doi: 10.1093/nar/gkac962. PMID: 36318260; PMCID: PMC9825473