NeMO Identifier: Collection

NeMO ID: nemo:col-ynb19oi

  • Collection Name: BICAN__MetaSnapshot__2025-08-12__HMBA__aibs__nuclei__10X_genomics_multiome__rhesus_macaque__demultiplexed_fastq__coh-8boto7m__no_restriction
  • Short Name: BICAN__MetaSnapshot__2025-08-12__HMBA__aibs__nuclei__10X_genomics_multiome__rhesus_macaque__demultiplexed_fastq__coh-8boto7m__no_restriction
  • Programs: bican

COLLECTION METADATA

  • Description:
  • Collection Type: Static
  • Taxa: rhesus macaque
  • Assays: multiome; chromatin , multiome; transcriptome
  • Anatomical Regions: ventral group of lateral nucleus , caudate nucleus , mediodorsal nucleus of thalamus , septal nuclei , islands of Calleja , lateral nuclear complex of thalamus , hindbrain (rhombencephalon) , Ventral pallidus , substantia nigra , basal nucleus of Meynert , olfactory tubercle , anterior amygdaloid area , subthalamic nucleus , lateral hemisphere, anterior lobe portion , vermis, flocculonodular lobe portion (nodulus) , presubicular cortex (presubiculum) , inferior olive , head of caudate , tail of caudate , basolateral nuclear group , globus pallidus , superior colliculus , posteroventral putamen , intralaminar nuclear complex , hypothalamus , lateral hemisphere, posterior lobe portion , subicular cortex , rostral putamen , dentate area (dentate gyrus) , midbrain (mesencephalon) , external segment of globus pallidus , body of caudate , pulvinar of thalamus , reticular nucleus of thalamus , corticomedial nuclear group , posterior nuclear complex of thalamus , caudal putamen , bed nucleus of stria terminalis , subiculum , lateral nucleus , subgenual (subcallosal) division of MFC (area 25) , hippocampal proper , paravermis, anterior lobe portion , primary visual cortex (striate cortex, area V1/17) , cerebellar deep nuclei , vermis, anterior lobe portion , putamen , internal segment of globus pallidus , medial geniculate nuclei , posterior group of intralaminar nuclei , pyramidal part of medulla oblongata , anterior nuclear complex of thalamus , lateral hemisphere, flocculonodular lobe portion , paravermis, posterior lobe portion , lateral geniculate nucleus , entorhinal cortex , pons , fastigial (medial) nucleus , amygdaloid complex , central lateral nucleus of the thalamus , medial nuclear complex of thalamus , nucleus accumbens , amygdalohippocampal transition area , dentate (lateral) nucleus , myelencephalon (medulla oblongata) , vermis, posterior lobe portion
  • Modalities: multimodal
  • Techniques: 10X genomics multiome;atac-seq , 10X genomics multiome;rnaseq
  • Specimen Type:
  • Keywords:
  • Contact:
  • Grant Numbers: UM1MH130981
  • Funding Agency: NIMH
  • URL Protocol:
  • Data Access: open

Project(s) this Collection Belongs To

ID Title
nemo:prj-t8d9ty5 Functionally guided adult whole brain cell atlas in human and NHP

Brain Region(s) of Interest

Name
ventral group of lateral nucleus
caudate nucleus
mediodorsal nucleus of thalamus
septal nuclei
islands of Calleja
lateral nuclear complex of thalamus
hindbrain (rhombencephalon)
Ventral pallidus
substantia nigra
basal nucleus of Meynert
olfactory tubercle
anterior amygdaloid area
subthalamic nucleus
lateral hemisphere, anterior lobe portion
vermis, flocculonodular lobe portion (nodulus)
presubicular cortex (presubiculum)
inferior olive
head of caudate
tail of caudate
basolateral nuclear group
globus pallidus
superior colliculus
posteroventral putamen
intralaminar nuclear complex
hypothalamus
lateral hemisphere, posterior lobe portion
subicular cortex
rostral putamen
dentate area (dentate gyrus)
midbrain (mesencephalon)
external segment of globus pallidus
body of caudate
pulvinar of thalamus
reticular nucleus of thalamus
corticomedial nuclear group
posterior nuclear complex of thalamus
caudal putamen
bed nucleus of stria terminalis
subiculum
lateral nucleus
subgenual (subcallosal) division of MFC (area 25)
hippocampal proper
paravermis, anterior lobe portion
primary visual cortex (striate cortex, area V1/17)
cerebellar deep nuclei
vermis, anterior lobe portion
putamen
internal segment of globus pallidus
medial geniculate nuclei
posterior group of intralaminar nuclei
pyramidal part of medulla oblongata
anterior nuclear complex of thalamus
lateral hemisphere, flocculonodular lobe portion
paravermis, posterior lobe portion
lateral geniculate nucleus
entorhinal cortex
pons
fastigial (medial) nucleus
amygdaloid complex
central lateral nucleus of the thalamus
medial nuclear complex of thalamus
nucleus accumbens
amygdalohippocampal transition area
dentate (lateral) nucleus
myelencephalon (medulla oblongata)
vermis, posterior lobe portion

Parent Collections

Collection ID Name Type Short Name Submission Status
nemo:col-dgu8s60 BICAN__MetaCumulative__2025-08-12__HMBA__aibs__nuclei__10X_genomics_multiome__rhesus_macaque__demultiplexed_fastq__coh-8boto7m__no_restriction collection
nemo:col-gnbwm7e BICAN-2025-09-RR-SCO collection BICAN-2025-09-RR-SCO

Child Collections

Collection ID Name Type Short Name Submission Status
nemo:col-t73ddet BICAN__Snapshot__2025-08-12__HMBA__aibs__nuclei__10xMultiome_ATACseq__rhesus_macaque__demultiplexed_fastq__coh-8boto7m__no_restriction files BICAN__Snapshot__2025-08-12__HMBA__aibs__nuclei__10xMultiome_ATACseq__rhesus_macaque__demultiplexed_fastq__coh-8boto7m__no_restriction
nemo:col-rpsij5k BICAN__Snapshot__2025-08-12__HMBA__aibs__nuclei__10xMultiome_RNAseq__rhesus_macaque__demultiplexed_fastq__coh-8boto7m__no_restriction files BICAN__Snapshot__2025-08-12__HMBA__aibs__nuclei__10xMultiome_RNAseq__rhesus_macaque__demultiplexed_fastq__coh-8boto7m__no_restriction

Documentation


Data Citation:

Dataset: Trygve Bakken, Darren Bertagnolli, Tamara Casper, Anish Bhaswanth Chakka, Rushil Chakrabarty, Michael Clark, Nick Dee, Rebecca Ferrer, Yuanyuan Fu, Aaron Garcia, Jessica Gloe, Jeff Goldy, Junitta Guzman, Daniel Hirschstein, Windy Ho, Rebecca Hodge, Katelyn James, Nelson Johansen, Danielle L. Jones, Kathryn Jordan, Matthew Jungert, Madhav Kannan, Inkar Kapen, Lauren Kruse, Changkyu Lee, Boaz P. Levi, Rachel McCue, Beagan Nguy, Nicholas Peña, Trangthanh Pham, Elliot Phillips, Nadiya V. Shapovalova, Kimberly A. Smith, Cassandra Sobieski, Michael Tieu, Amy Torkelson, Alex Tran, Jingyi Xie, Zizhen Yao, Dan Yuan, Hongkui Zeng, Ed Lein (2024) Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from rhesus macaque brain [Dataset]. Available from: https://assets.nemoarchive.org/col-ynb19oi.

NeMO Citation:

Ament SA, Adkins RS, Carter R, Chrysostomou E, Colantuoni C, Crabtree J, Creasy HH, Degatano K, Felix V, Gandt P, Garden GA, Giglio M, Herb BR, Khajouei F, Kiernan E, McCracken C, McDaniel K, Nadendla S, Nickel L, Olley D, Orvis J, Receveur JP, Schor M, Sonthalia S, Tickle TL, Way J, Hertzano R, Mahurkar AA, White OR. The Neuroscience Multi-Omic Archive: a BRAIN Initiative resource for single-cell transcriptomic and epigenomic data from the mammalian brain. Nucleic Acids Res. 2023 Jan 6;51(D1):D1075-D1085. doi: 10.1093/nar/gkac962. PMID: 36318260; PMCID: PMC9825473