BICAN__Snapshot__2026-09-25__HMBA__aibs__nuclei__10xMultiome_RNAseq__human__demultiplexed_fastq__open__no_restriction
Program
bican
Collection Type
Static
Specimen Type
nuclei
This collection contains human demultiplexed_fastq files from the project HMBA. Files in this collection include 10xMultiome_RNAseq data from nuclei.
Download URLs
No download URLs listed for this collection.
Anatomical Regions
- medial division of centromedian nucleus of thalamus
- dorsal division of basomedial nucleus
- molecular layer of rostral dentate gyrus
- nucleus coeruleus
- paracentral nucleus of thalamus
- dorsal subdivision of BNSTlc
- central part of medial division of MD
- shell of nucleus accumbens
- core of nucleus accumbens
- medial parabrachial nucleus
- intermediate division of lateral septal nucleus
- intermediate division of basolateral nucleus
- medial (posterior) entorhinal cortex
- granular cell layer of VeF
- ventral subdivision of BNSTl
- medial division of PPHC (area TH)
- cuneate nucleus
- ventral division of basomedial nucleus
- caudal subdivision of BNSTm
- amygdalocortical (corticoamygdaloid) transition area
- rostral subiculum
- medullary reticular formation
- nucleus of diagonal band
- rostral subdivision of area 36
- stratum pyramidale of caudal CA2
- tail of caudate
- medial preoptic nucleus
- posterior hypothalamic nucleus
- inferior nucleus of pulvinar
- magnocellular division of reticular nucleus
- substantia nigra, compact part
- intermediate division of lateral nucleus
- superior colliculus
- multiform (lateral) division of MD
- stratum pyramidale of rostral CA3
- supraoptic region of HTH
- proximal parasubiculum
- stratum pyramidale of rostral CA1
- anteroventral nucleus of thalamus
- temporal claustrum
- zona incerta
- amygdalostriatal transition area
- white matter of hindbrain
- sagulum nucleus
- dorsal (magnocellular) division of basolateral nucleus
- ventral medial nucleus of thalamus
- endopiriform nucleus
- subparaventricular zone
- molecular layer of VeA
- ventral tegmental nucleus
- lateral interpositus (emboliform) nucleus
- medial mammillary nucleus
- laminar IX of spinal cord
- external segment of globus pallidus
- caudal presubiculum (postsubiculum)
- stratum pyramidale of caudal CA1
- body of caudate
- granular cell layer of PVPi
- ventral tegmental area
- anterior nucleus of pulvinar
- koniocellular layer of DLG
- amiculum of the olive
- central nuclear group
- reuniens nucleus (medioventral nucleus) of thalamus
- bed nucleus of stria terminalis
- subgenual (subcallosal) division of MFC (area 25)
- amygdalohippocampal area
- reticulotegmental nucleus, dorsal part
- laterodorsal portion of STH
- uncal subiculum
- stratum lacunosum-moleculare of uncal CA1
- layer 6 of DLG
- pregeniculate nucleus
- primary visual cortex (striate cortex, area V1/17)
- caudal prosubiculum
- subcoeruleus nucleus
- lateral posterior nucleus of thalamus
- lateral division of central lateral nucleus
- external (accessory/lateral) cuneate nucleus
- anterior hypothalamic nucleus
- caudal subdivision of area 35
- parabrachial pigmented nucleus
- basolateral nucleus (basal nucleus)
- medial nucleus of pulvinar
- central subdivision of BNSTl
- granular layer of caudal dentate gyrus
- horizontal subdivision of nucleus of diagonal band
- dorsal subdivision of VLC
- caudal linear nucleus of the raphe
- ventral claustrum
- rostral division of VL
- pons
- central medial nucleus of thalamus
- paraventricular nucleus
- lateral (anterior) entorhinal cortex
- substantia innominata
- spinal trigeminal nucleus, caudal part
- stratum pyramidale of uncal CA2
- prepositus hypoglossal nucleus
- periaqueductal gray substance
- Purkinje cell layer of VePi
- rostral subdivision of BNSTm
- magnocellular division of VA
- pontine nucleus
- layer III of piriform cortex
- rostral presubiculum
- lateral subdivision of central nucleus
- Ventral pallidus
- magnocellular (medial) division of MD
- granular cell layer of VeA
- anterior amygdaloid area
- rostral prosubiculum
- granular layer of uncal dentate gyrus
- granular layer of rostral dentate gyrus
- nucleus of the field of Forel
- densocelllular (paralamellar) division of MD
- anteromedial nucleus of thalamus
- ventral subdivision of CoA
- polyform layer of caudal dentate gyrus
- lateral nucleus of pulvinar
- distal parasubiculum
- molecular layer of CBLA
- lateral habenular nucleus
- paralaminar nucleus
- central gray of pons
- ventral division of lateral septal nucleus
- dorsal division of lateral nucleus
- head of caudate
- ventral posterior inferior nucleus
- lateral olfactory area
- laterodorsal tegmental nucleus
- stratum lacunosum-moleculare of uncal CA2
- caudal division of central lateral nucleus
- caudal subdivision of area 21
- red nucleus
- lateral hypothalamic area, tuberal part
- retrochiasmatic nucleus
- granular cell layer of PVA
- posteroventral putamen
- gigantocellular reticular nuclei
- stratum pyramidale of caudal CA3
- granular cell layer of CBLF
- parafascicular nucleus of thalamus
- midbrain (mesencephalon)
- lateral preoptic area
- raphe magnus nucleus
- pallidohypothalamic area
- venrtral subdivision of CoP
- parvocellular (central) division of MD
- Dorsal claustrum
- decussation of superior cerebellar peduncle
- Pontine reticular formation
- lateral hypothalamic area, posterior part
- reticular nucleus of thalamus
- molecular layer of PVA
- stratum pyramidale of rostral CA2
- parvocellular division of VPM
- caudal division of ventral posterior lateral nucleus
- periventricular nucleus, supraoptic portion
- rostral subdivision of area 35
- caudal subdivision of medial nucleus
- uncal prosubiculum
- molecular layer of CBLPi
- pre-Edinger-Westphal nucleus
- limitans nucleus
- peri-caudate ependymal and subependymal zone
- stratum pyramidale of uncal CA1
- rostral division of ventral posterior lateral nucleus
- spinal cord
- central gray of medulla oblongata
- reticulotegmental nucleus,
- parvocellular division of VA
- putamen
- lateral parabrachial nucleus
- internal segment of globus pallidus
- layer 4 of DLG
- polyform layer of rostral dentate gyrus
- periventricular area of thalamus
- lateral dorsal nucleus of thalamus
- molecular layer of caudal dentate gyrus
- ventral subdivision of BNSTlc
- solitary nucleus
- dorsomedial hypothalamic nucleus
- gracile nucleus
- parvicellular layer of DLG
- fasciculosus nucleus of thalamus
- dorsal medial geniculate nucleus
- caudal subiculum
- medial lemniscus
- lateroventral portion of STH
- arcuate nucleus of medulla oblongata
- inferior olive, principal nucleus
- layer III of piriform-entorhinal-amygdaloid area
- pyramidal cells of rostral CA4
- medial preoptic area
- stratum pyramidale of uncal CA3
- medial division of central lateral nucleus
- paraventricular nucleus of hypothalamus
- amygdalohippocampal transition area
- centromedian nucleus of thalamus
- dentate (lateral) nucleus
- ventral subdivision of VLC
- medial vestibular nucleus
- myelencephalon (medulla oblongata)
- substantia nigra, reticular part
- pretectal region
- white matter of forebrain
Taxa
human
Projects this collection belongs to
-
Functionally guided adult whole brain cell atlas in human and NHP
Assays, Modalities & Techniques
Child collections
No child collections listed for BICAN__Snapshot__2026-09-25__HMBA__aibs__nuclei__10xMultiome_RNAseq__human__demultiplexed_fastq__open__no_restriction collection.
Parent collections
-
BICAN__MetaSnapshot__2026-09-25__HMBA__aibs__nuclei__10X_genomics_multiome__human__demultiplexed_fastq__open__no_restrictioncollection
Associated publications
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URL Protocols
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Contributors
No contributors listed for BICAN__Snapshot__2026-09-25__HMBA__aibs__nuclei__10xMultiome_RNAseq__human__demultiplexed_fastq__open__no_restriction collection.
Cross-archive links
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