Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from human brain - fastq (BICAN-2026-09-RR-SCO Snapshot RNA)
Program
bican
Collection Type
Static
Specimen Type
nuclei
Keywords
Rapid Release
2026
As part of the BRAIN Initiative Cell Atlas Network, single nuclei from humans were assayed using the 10X Genomics Multiome platform - fastq (BICAN-2026-09-RR-SCO Snapshot RNA)
Download URLs
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Download BDBag https://data.nemoarchive.org/bdbags/BICAN/BICAN-2026-09-RR-SCO/col-s7gemj3__BICAN__Snapshot__2026-09-25__HMBA__aibs__nuclei__10xMultiome_RNAseq__human__demultiplexed_fastq__open__no_restriction.tgzRaw BDBag
Anatomical Regions
- medial division of centromedian nucleus of thalamus
- dorsal division of basomedial nucleus
- molecular layer of rostral dentate gyrus
- nucleus coeruleus
- paracentral nucleus of thalamus
- dorsal subdivision of BNSTlc
- central part of medial division of MD
- shell of nucleus accumbens
- core of nucleus accumbens
- medial parabrachial nucleus
- intermediate division of lateral septal nucleus
- intermediate division of basolateral nucleus
- medial (posterior) entorhinal cortex
- granular cell layer of VeF
- ventral subdivision of BNSTl
- medial division of PPHC (area TH)
- cuneate nucleus
- ventral division of basomedial nucleus
- caudal subdivision of BNSTm
- amygdalocortical (corticoamygdaloid) transition area
- rostral subiculum
- medullary reticular formation
- nucleus of diagonal band
- rostral subdivision of area 36
- stratum pyramidale of caudal CA2
- tail of caudate
- medial preoptic nucleus
- posterior hypothalamic nucleus
- inferior nucleus of pulvinar
- magnocellular division of reticular nucleus
- substantia nigra, compact part
- intermediate division of lateral nucleus
- superior colliculus
- multiform (lateral) division of MD
- stratum pyramidale of rostral CA3
- supraoptic region of HTH
- proximal parasubiculum
- stratum pyramidale of rostral CA1
- anteroventral nucleus of thalamus
- temporal claustrum
- zona incerta
- amygdalostriatal transition area
- white matter of hindbrain
- sagulum nucleus
- dorsal (magnocellular) division of basolateral nucleus
- ventral medial nucleus of thalamus
- endopiriform nucleus
- subparaventricular zone
- molecular layer of VeA
- ventral tegmental nucleus
- lateral interpositus (emboliform) nucleus
- medial mammillary nucleus
- laminar IX of spinal cord
- external segment of globus pallidus
- caudal presubiculum (postsubiculum)
- stratum pyramidale of caudal CA1
- body of caudate
- granular cell layer of PVPi
- ventral tegmental area
- anterior nucleus of pulvinar
- koniocellular layer of DLG
- amiculum of the olive
- central nuclear group
- reuniens nucleus (medioventral nucleus) of thalamus
- bed nucleus of stria terminalis
- subgenual (subcallosal) division of MFC (area 25)
- amygdalohippocampal area
- reticulotegmental nucleus, dorsal part
- laterodorsal portion of STH
- uncal subiculum
- stratum lacunosum-moleculare of uncal CA1
- layer 6 of DLG
- pregeniculate nucleus
- primary visual cortex (striate cortex, area V1/17)
- caudal prosubiculum
- subcoeruleus nucleus
- lateral posterior nucleus of thalamus
- lateral division of central lateral nucleus
- external (accessory/lateral) cuneate nucleus
- anterior hypothalamic nucleus
- caudal subdivision of area 35
- parabrachial pigmented nucleus
- basolateral nucleus (basal nucleus)
- medial nucleus of pulvinar
- central subdivision of BNSTl
- granular layer of caudal dentate gyrus
- horizontal subdivision of nucleus of diagonal band
- dorsal subdivision of VLC
- caudal linear nucleus of the raphe
- ventral claustrum
- rostral division of VL
- pons
- central medial nucleus of thalamus
- paraventricular nucleus
- lateral (anterior) entorhinal cortex
- substantia innominata
- spinal trigeminal nucleus, caudal part
- stratum pyramidale of uncal CA2
- prepositus hypoglossal nucleus
- periaqueductal gray substance
- Purkinje cell layer of VePi
- rostral subdivision of BNSTm
- magnocellular division of VA
- pontine nucleus
- layer III of piriform cortex
- rostral presubiculum
- lateral subdivision of central nucleus
- Ventral pallidus
- magnocellular (medial) division of MD
- granular cell layer of VeA
- anterior amygdaloid area
- rostral prosubiculum
- granular layer of uncal dentate gyrus
- granular layer of rostral dentate gyrus
- nucleus of the field of Forel
- densocelllular (paralamellar) division of MD
- anteromedial nucleus of thalamus
- ventral subdivision of CoA
- polyform layer of caudal dentate gyrus
- lateral nucleus of pulvinar
- distal parasubiculum
- molecular layer of CBLA
- lateral habenular nucleus
- paralaminar nucleus
- central gray of pons
- ventral division of lateral septal nucleus
- dorsal division of lateral nucleus
- head of caudate
- ventral posterior inferior nucleus
- lateral olfactory area
- laterodorsal tegmental nucleus
- stratum lacunosum-moleculare of uncal CA2
- caudal division of central lateral nucleus
- caudal subdivision of area 21
- red nucleus
- lateral hypothalamic area, tuberal part
- retrochiasmatic nucleus
- granular cell layer of PVA
- posteroventral putamen
- gigantocellular reticular nuclei
- stratum pyramidale of caudal CA3
- granular cell layer of CBLF
- parafascicular nucleus of thalamus
- midbrain (mesencephalon)
- lateral preoptic area
- raphe magnus nucleus
- pallidohypothalamic area
- venrtral subdivision of CoP
- parvocellular (central) division of MD
- Dorsal claustrum
- decussation of superior cerebellar peduncle
- Pontine reticular formation
- lateral hypothalamic area, posterior part
- reticular nucleus of thalamus
- molecular layer of PVA
- stratum pyramidale of rostral CA2
- parvocellular division of VPM
- caudal division of ventral posterior lateral nucleus
- periventricular nucleus, supraoptic portion
- rostral subdivision of area 35
- caudal subdivision of medial nucleus
- uncal prosubiculum
- molecular layer of CBLPi
- pre-Edinger-Westphal nucleus
- limitans nucleus
- peri-caudate ependymal and subependymal zone
- stratum pyramidale of uncal CA1
- rostral division of ventral posterior lateral nucleus
- spinal cord
- central gray of medulla oblongata
- reticulotegmental nucleus,
- parvocellular division of VA
- putamen
- lateral parabrachial nucleus
- internal segment of globus pallidus
- layer 4 of DLG
- polyform layer of rostral dentate gyrus
- periventricular area of thalamus
- lateral dorsal nucleus of thalamus
- molecular layer of caudal dentate gyrus
- ventral subdivision of BNSTlc
- solitary nucleus
- dorsomedial hypothalamic nucleus
- gracile nucleus
- parvicellular layer of DLG
- fasciculosus nucleus of thalamus
- dorsal medial geniculate nucleus
- caudal subiculum
- medial lemniscus
- lateroventral portion of STH
- arcuate nucleus of medulla oblongata
- inferior olive, principal nucleus
- layer III of piriform-entorhinal-amygdaloid area
- pyramidal cells of rostral CA4
- medial preoptic area
- stratum pyramidale of uncal CA3
- medial division of central lateral nucleus
- paraventricular nucleus of hypothalamus
- amygdalohippocampal transition area
- centromedian nucleus of thalamus
- dentate (lateral) nucleus
- ventral subdivision of VLC
- medial vestibular nucleus
- myelencephalon (medulla oblongata)
- substantia nigra, reticular part
- pretectal region
- white matter of forebrain
Taxa
human
Projects this collection belongs to
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Functionally guided adult whole brain cell atlas in human and NHP
Assays, Modalities & Techniques
Child collections
No child collections listed for Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from human brain - fastq (BICAN-2026-09-RR-SCO Snapshot RNA) collection.
Parent collections
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Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from human brain - fastq (BICAN-2026-09-RR-SCO MetaSnapshot)collection
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Cross-archive links
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