Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from human brain - fastq (BICAN-2026-09-RR-SCO MetaSnapshot)
Program
bican
Collection Type
Static
Keywords
Rapid Release
2026
As part of the BRAIN Initiative Cell Atlas Network, single nuclei from humans were assayed using the 10X Genomics Multiome platform - fastq (BICAN-2026-09-RR-SCO MetaSnapshot)
Download URLs
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Download BDBag https://data.nemoarchive.org/bdbags/BICAN/BICAN-2026-09-RR-SCO/col-7cyoccc__BICAN__MetaSnapshot__2026-09-25__HMBA__aibs__nuclei__10X_genomics_multiome__human__demultiplexed_fastq__open__no_restriction.tgzRaw BDBag
Anatomical Regions
- dorsal division of basomedial nucleus
- molecular layer of rostral dentate gyrus
- paracentral nucleus of thalamus
- dorsal subdivision of BNSTlc
- central part of medial division of MD
- core of nucleus accumbens
- medial parabrachial nucleus
- intermediate division of lateral septal nucleus
- granular cell layer of CBLPs
- medial (posterior) entorhinal cortex
- cuneate nucleus
- ventral division of basomedial nucleus
- rostral subiculum
- medullary reticular formation
- stratum pyramidale of caudal CA2
- inferior nucleus of pulvinar
- superior colliculus
- intermediate division of lateral nucleus
- proximal parasubiculum
- stratum pyramidale of rostral CA1
- zona incerta
- amygdalostriatal transition area
- molecular layer of VeA
- ventral tegmental nucleus
- laminar IX of spinal cord
- external segment of globus pallidus
- caudal presubiculum (postsubiculum)
- body of caudate
- granular cell layer of PVPi
- ventral tegmental area
- anterior nucleus of pulvinar
- koniocellular layer of DLG
- amiculum of the olive
- central nuclear group
- reuniens nucleus (medioventral nucleus) of thalamus
- bed nucleus of stria terminalis
- subgenual (subcallosal) division of MFC (area 25)
- reticulotegmental nucleus, dorsal part
- laterodorsal portion of STH
- stratum lacunosum-moleculare of uncal CA1
- primary visual cortex (striate cortex, area V1/17)
- caudal prosubiculum
- lateral posterior nucleus of thalamus
- lateral division of central lateral nucleus
- anterior hypothalamic nucleus
- parabrachial pigmented nucleus
- granular layer of caudal dentate gyrus
- horizontal subdivision of nucleus of diagonal band
- dorsal subdivision of VLC
- pons
- paraventricular nucleus
- substantia innominata
- spinal trigeminal nucleus, caudal part
- Purkinje cell layer of VePi
- rostral subdivision of BNSTm
- pontine nucleus
- layer III of piriform cortex
- rostral presubiculum
- magnocellular (medial) division of MD
- granular layer of rostral dentate gyrus
- anteromedial nucleus of thalamus
- ventral subdivision of CoA
- distal parasubiculum
- molecular layer of CBLA
- paralaminar nucleus
- central gray of pons
- ventral division of lateral septal nucleus
- dorsal division of lateral nucleus
- ventral posterior inferior nucleus
- caudal subdivision of area 21
- posteroventral putamen
- pallidohypothalamic area
- venrtral subdivision of CoP
- Dorsal claustrum
- Pontine reticular formation
- reticular nucleus of thalamus
- stratum pyramidale of rostral CA2
- rostral subdivision of area 35
- uncal prosubiculum
- molecular layer of CBLPi
- limitans nucleus
- peri-caudate ependymal and subependymal zone
- rostral division of ventral posterior lateral nucleus
- spinal cord
- parvocellular division of VA
- lateral parabrachial nucleus
- internal segment of globus pallidus
- molecular layer of caudal dentate gyrus
- ventral subdivision of BNSTlc
- dorsomedial hypothalamic nucleus
- parvicellular layer of DLG
- fasciculosus nucleus of thalamus
- dorsal medial geniculate nucleus
- caudal subiculum
- lateroventral portion of STH
- arcuate nucleus of medulla oblongata
- pyramidal cells of rostral CA4
- stratum pyramidale of uncal CA3
- paraventricular nucleus of hypothalamus
- amygdalohippocampal transition area
- ventral subdivision of VLC
- medial vestibular nucleus
- myelencephalon (medulla oblongata)
- medial nucleus of pulvinar
- dorsal (magnocellular) division of basolateral nucleus
- medial division of centromedian nucleus of thalamus
- nucleus coeruleus
- shell of nucleus accumbens
- intermediate division of basolateral nucleus
- granular cell layer of VeF
- ventral subdivision of BNSTl
- medial division of PPHC (area TH)
- amygdalocortical (corticoamygdaloid) transition area
- caudal subdivision of BNSTm
- nucleus of diagonal band
- rostral subdivision of area 36
- tail of caudate
- posterior hypothalamic nucleus
- medial preoptic nucleus
- magnocellular division of reticular nucleus
- substantia nigra, compact part
- multiform (lateral) division of MD
- stratum pyramidale of rostral CA3
- supraoptic region of HTH
- anteroventral nucleus of thalamus
- temporal claustrum
- white matter of hindbrain
- sagulum nucleus
- ventral medial nucleus of thalamus
- endopiriform nucleus
- subparaventricular zone
- granular cell layer of VePi
- lateral interpositus (emboliform) nucleus
- medial mammillary nucleus
- stratum pyramidale of caudal CA1
- amygdalohippocampal area
- uncal subiculum
- layer 6 of DLG
- pregeniculate nucleus
- subcoeruleus nucleus
- external (accessory/lateral) cuneate nucleus
- caudal subdivision of area 35
- basolateral nucleus (basal nucleus)
- central subdivision of BNSTl
- caudal linear nucleus of the raphe
- ventral claustrum
- rostral division of VL
- central medial nucleus of thalamus
- lateral (anterior) entorhinal cortex
- stratum pyramidale of uncal CA2
- prepositus hypoglossal nucleus
- periaqueductal gray substance
- magnocellular division of VA
- lateral subdivision of central nucleus
- Ventral pallidus
- granular cell layer of VeA
- anterior amygdaloid area
- rostral prosubiculum
- granular layer of uncal dentate gyrus
- densocelllular (paralamellar) division of MD
- nucleus of the field of Forel
- polyform layer of caudal dentate gyrus
- lateral nucleus of pulvinar
- lateral habenular nucleus
- head of caudate
- lateral olfactory area
- laterodorsal tegmental nucleus
- stratum lacunosum-moleculare of uncal CA2
- caudal division of central lateral nucleus
- red nucleus
- lateral hypothalamic area, tuberal part
- retrochiasmatic nucleus
- granular cell layer of PVA
- gigantocellular reticular nuclei
- stratum pyramidale of caudal CA3
- granular cell layer of CBLF
- parafascicular nucleus of thalamus
- midbrain (mesencephalon)
- lateral preoptic area
- raphe magnus nucleus
- parvocellular (central) division of MD
- decussation of superior cerebellar peduncle
- lateral hypothalamic area, posterior part
- molecular layer of PVA
- parvocellular division of VPM
- caudal division of ventral posterior lateral nucleus
- periventricular nucleus, supraoptic portion
- caudal subdivision of medial nucleus
- pre-Edinger-Westphal nucleus
- molecular layer of VeF
- stratum pyramidale of uncal CA1
- central gray of medulla oblongata
- reticulotegmental nucleus,
- putamen
- layer 4 of DLG
- polyform layer of rostral dentate gyrus
- periventricular area of thalamus
- lateral dorsal nucleus of thalamus
- solitary nucleus
- gracile nucleus
- medial lemniscus
- molecular layer of VePi
- inferior olive, principal nucleus
- layer III of piriform-entorhinal-amygdaloid area
- medial preoptic area
- medial division of central lateral nucleus
- centromedian nucleus of thalamus
- dentate (lateral) nucleus
- granular cell layer of CBLA
- substantia nigra, reticular part
- pretectal region
- white matter of forebrain
Taxa
human
Projects this collection belongs to
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Functionally guided adult whole brain cell atlas in human and NHP
Assays, Modalities & Techniques
Child collections
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Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from human brain - fastq (BICAN-2026-09-RR-SCO Snapshot ATAC)
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Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from human brain - fastq (BICAN-2026-09-RR-SCO Snapshot RNA)
Parent collections
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Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from human brain (MetaCumulative)collection
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BICAN Rapid Release Inventory: Single cell transcriptomics and epigenomics (BICAN-2026-09-RR-SCO)collection
Associated publications
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No contributors listed for Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from human brain - fastq (BICAN-2026-09-RR-SCO MetaSnapshot) collection.
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