NeMO Identifier: Collection

NeMO ID: nemo:col-t73ddet

  • Collection Name: BICAN__Snapshot__2025-08-12__HMBA__aibs__nuclei__10xMultiome_ATACseq__rhesus_macaque__demultiplexed_fastq__coh-8boto7m__no_restriction
  • Short Name: BICAN__Snapshot__2025-08-12__HMBA__aibs__nuclei__10xMultiome_ATACseq__rhesus_macaque__demultiplexed_fastq__coh-8boto7m__no_restriction
  • Programs: bican

COLLECTION METADATA

  • Description:
  • Collection Type: Static
  • Taxa: rhesus macaque
  • Assays: multiome; chromatin
  • Anatomical Regions: ventral group of lateral nucleus , pulvinar of thalamus , reticular nucleus of thalamus , corticomedial nuclear group , caudate nucleus , posterior nuclear complex of thalamus , caudal putamen , mediodorsal nucleus of thalamus , septal nuclei , islands of Calleja , bed nucleus of stria terminalis , subiculum , lateral nucleus , subgenual (subcallosal) division of MFC (area 25) , lateral nuclear complex of thalamus , hindbrain (rhombencephalon) , Ventral pallidus , hippocampal proper , substantia nigra , basal nucleus of Meynert , paravermis, anterior lobe portion , anterior amygdaloid area , olfactory tubercle , subthalamic nucleus , primary visual cortex (striate cortex, area V1/17) , cerebellar deep nuclei , vermis, anterior lobe portion , putamen , internal segment of globus pallidus , medial geniculate nuclei , vermis, flocculonodular lobe portion (nodulus) , presubicular cortex (presubiculum) , posterior group of intralaminar nuclei , lateral hemisphere, anterior lobe portion , inferior olive , pyramidal part of medulla oblongata , head of caudate , tail of caudate , anterior nuclear complex of thalamus , basolateral nuclear group , lateral hemisphere, flocculonodular lobe portion , globus pallidus , superior colliculus , posteroventral putamen , paravermis, posterior lobe portion , intralaminar nuclear complex , lateral geniculate nucleus , lateral hemisphere, posterior lobe portion , entorhinal cortex , pons , subicular cortex , hypothalamus , rostral putamen , amygdaloid complex , fastigial (medial) nucleus , dentate area (dentate gyrus) , midbrain (mesencephalon) , central lateral nucleus of the thalamus , medial nuclear complex of thalamus , nucleus accumbens , amygdalohippocampal transition area , dentate (lateral) nucleus , myelencephalon (medulla oblongata) , external segment of globus pallidus , body of caudate , vermis, posterior lobe portion
  • Modalities: multimodal
  • Techniques: 10X genomics multiome;atac-seq
  • Specimen Type: nuclei
  • Keywords:
  • Contact:
  • Grant Numbers: UM1MH130981
  • Funding Agency: NIMH
  • URL Protocol:
  • Data Access: open

Project(s) this Collection Belongs To

ID Title
nemo:prj-t8d9ty5 Functionally guided adult whole brain cell atlas in human and NHP

Brain Region(s) of Interest

Name
ventral group of lateral nucleus
pulvinar of thalamus
reticular nucleus of thalamus
corticomedial nuclear group
caudate nucleus
posterior nuclear complex of thalamus
caudal putamen
mediodorsal nucleus of thalamus
septal nuclei
islands of Calleja
bed nucleus of stria terminalis
subiculum
lateral nucleus
subgenual (subcallosal) division of MFC (area 25)
lateral nuclear complex of thalamus
hindbrain (rhombencephalon)
Ventral pallidus
hippocampal proper
substantia nigra
basal nucleus of Meynert
paravermis, anterior lobe portion
anterior amygdaloid area
olfactory tubercle
subthalamic nucleus
primary visual cortex (striate cortex, area V1/17)
cerebellar deep nuclei
vermis, anterior lobe portion
putamen
internal segment of globus pallidus
medial geniculate nuclei
vermis, flocculonodular lobe portion (nodulus)
presubicular cortex (presubiculum)
posterior group of intralaminar nuclei
lateral hemisphere, anterior lobe portion
inferior olive
pyramidal part of medulla oblongata
head of caudate
tail of caudate
anterior nuclear complex of thalamus
basolateral nuclear group
lateral hemisphere, flocculonodular lobe portion
globus pallidus
superior colliculus
posteroventral putamen
paravermis, posterior lobe portion
intralaminar nuclear complex
lateral geniculate nucleus
lateral hemisphere, posterior lobe portion
entorhinal cortex
pons
subicular cortex
hypothalamus
rostral putamen
amygdaloid complex
fastigial (medial) nucleus
dentate area (dentate gyrus)
midbrain (mesencephalon)
central lateral nucleus of the thalamus
medial nuclear complex of thalamus
nucleus accumbens
amygdalohippocampal transition area
dentate (lateral) nucleus
myelencephalon (medulla oblongata)
external segment of globus pallidus
body of caudate
vermis, posterior lobe portion

Parent Collections

Collection ID Name Type Short Name Submission Status
nemo:col-ynb19oi BICAN__MetaSnapshot__2025-08-12__HMBA__aibs__nuclei__10X_genomics_multiome__rhesus_macaque__demultiplexed_fastq__coh-8boto7m__no_restriction collection BICAN__MetaSnapshot__2025-08-12__HMBA__aibs__nuclei__10X_genomics_multiome__rhesus_macaque__demultiplexed_fastq__coh-8boto7m__no_restriction

Documentation

PLEASE CITE NeMO DATA AS FOLLOWS:

Ament SA, Adkins RS, Carter R, Chrysostomou E, Colantuoni C, Crabtree J, Creasy HH, Degatano K, Felix V, Gandt P, Garden GA, Giglio M, Herb BR, Khajouei F, Kiernan E, McCracken C, McDaniel K, Nadendla S, Nickel L, Olley D, Orvis J, Receveur JP, Schor M, Sonthalia S, Tickle TL, Way J, Hertzano R, Mahurkar AA, White OR. The Neuroscience Multi-Omic Archive: a BRAIN Initiative resource for single-cell transcriptomic and epigenomic data from the mammalian brain. Nucleic Acids Res. 2023 Jan 6;51(D1):D1075-D1085. doi: 10.1093/nar/gkac962. PMID: 36318260; PMCID: PMC9825473