Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from marmoset brain (BICAN-2026-01-RR-SCO Snapshot ATAC)

Program

bican

Collection Type

Static

Specimen Type

nuclei

Keywords

Rapid Release 2026

As part of the BRAIN Initiative Cell Atlas Network, single nuclei from white-tufted-ear marmoset brain were assayed by 10X Genomics Multiome platform. (BICAN-2026-01-RR-SCO Snapshot ATAC)

Data citation: Dataset: Lakme Caceres, Shu Dan, Michael DeBerardine, Jessica Feliciano, Kirsten Levandowski, Reilly Nakamoto, Jessica Schembri, Jitendra Sharma, Atsushi Takahashi, Tsephel Thangpey, Ning Wang, Qiangge Zhang, Guoping Feng, Fenna Krienen (2024) Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from marmoset brain [Dataset]. Available from: https://assets.nemoarchive.org/nemo:col-eavx5o3
Funding agency: NIMH
Grant numbers: UM1MH130981
Access: open
License: No license listed

Download URLs

Download BDBag https://data.nemoarchive.org/bdbags/BICAN/BICAN-2026-01-RR-SCO/col-teva4fo__BICAN__Snapshot__2026-01-15__HMBA__princeton_lein__nuclei__10xMultiome_ATACseq__white-tufted-ear_marmoset__demultiplexed_fastq__open__no_restriction.tgz 4,384 files 15,634.88 GB

Raw BDBag

Anatomical Regions

pulvinar of thalamus
hippocampal gyrus (formation)
reticular nucleus of thalamus
caudate nucleus
posterior nuclear complex of thalamus
mediodorsal nucleus of thalamus
periaqueductal gray substance
bed nucleus of stria terminalis
substantia nigra, reticular part
Ventral pallidus
substantia nigra
parabrachial nuclei
putamen
medial geniculate nuclei
internal segment of globus pallidus
head of caudate
optic chiasm
Brain stem
thalamus
superior colliculus
brain
lateral geniculate nucleus
pons
zona incerta
rostral putamen
amygdaloid complex
mammillary body
midbrain reticular formation
lateral septal nucleus
medial preoptic area
Pontine reticular formation
nucleus accumbens
medial nucleus of pulvinar
external segment of globus pallidus

Taxa

white-tufted-ear marmoset

Projects this collection belongs to

nemo:prj-t8d9ty5

Functionally guided adult whole brain cell atlas in human and NHP

Assays, Modalities & Techniques

Assays: multiome; chromatin
Modalities: multimodal
Techniques: 10X genomics multiome;atac-seq

Child collections

No child collections listed for Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from marmoset brain (BICAN-2026-01-RR-SCO Snapshot ATAC) collection.

Parent collections

nemo:col-eavx5o3

Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from marmoset brain (BICAN-2026-01-RR-SCO MetaSnapshot)
collection

Associated publications

No publications linked yet.

URL Protocols

No protocol URLs listed for this collection.

Contributors

No contributors listed for Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from marmoset brain (BICAN-2026-01-RR-SCO Snapshot ATAC) collection.

Cross-archive links

No cross-archive links listed for this collection.