NeMO Identifier: Collection

NeMO ID: nemo:col-eavx5o3

  • Collection Name: Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from marmoset brain (BICAN-2026-01-RR-SCO MetaSnapshot)
  • Short Name: krienen_10XMultiome_marmoset_nuclei (BICAN-2026-01-RR-SCO MetaSnapshot)
  • Programs: bican

COLLECTION METADATA

  • Description:
  • Collection Type: Static
  • Taxa: white-tufted-ear marmoset
  • Assays: multiome; chromatin , multiome; transcriptome
  • Anatomical Regions: pulvinar of thalamus , hippocampal gyrus (formation) , reticular nucleus of thalamus , caudate nucleus , posterior nuclear complex of thalamus , mediodorsal nucleus of thalamus , periaqueductal gray substance , bed nucleus of stria terminalis , substantia nigra, reticular part , Ventral pallidus , substantia nigra , parabrachial nuclei , putamen , medial geniculate nuclei , internal segment of globus pallidus , head of caudate , optic chiasm , Brain stem , thalamus , superior colliculus , brain , lateral geniculate nucleus , pons , zona incerta , rostral putamen , amygdaloid complex , mammillary body , midbrain reticular formation , lateral septal nucleus , medial preoptic area , Pontine reticular formation , nucleus accumbens , medial nucleus of pulvinar , external segment of globus pallidus
  • Modalities: multimodal
  • Techniques: 10X genomics multiome;atac-seq , 10X genomics multiome;rnaseq
  • Specimen Type:
  • Keywords: BICAN , Rapid Release , 2026
  • Contact:
  • Grant Numbers: UM1MH130981
  • Funding Agency: NIMH
  • URL Protocol:
  • Data Access: open

Project(s) this Collection Belongs To

ID Title
nemo:prj-t8d9ty5 Functionally guided adult whole brain cell atlas in human and NHP

Brain Region(s) of Interest

Name
pulvinar of thalamus
hippocampal gyrus (formation)
reticular nucleus of thalamus
caudate nucleus
posterior nuclear complex of thalamus
mediodorsal nucleus of thalamus
periaqueductal gray substance
bed nucleus of stria terminalis
substantia nigra, reticular part
Ventral pallidus
substantia nigra
parabrachial nuclei
putamen
medial geniculate nuclei
internal segment of globus pallidus
head of caudate
optic chiasm
Brain stem
thalamus
superior colliculus
brain
lateral geniculate nucleus
pons
zona incerta
rostral putamen
amygdaloid complex
mammillary body
midbrain reticular formation
lateral septal nucleus
medial preoptic area
Pontine reticular formation
nucleus accumbens
medial nucleus of pulvinar
external segment of globus pallidus

Parent Collections

Collection ID Name Type Short Name Submission Status
nemo:col-cnav2ma Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from marmoset brain (MetaCumulative) collection krienen_10XMultiome_marmoset_nuclei (MetaCumulative)
nemo:col-ow59b0f BICAN Rapid Release Inventory: Single cell transcriptomics and epigenomics (BICAN-2026-01-RR-SCO) collection BICAN-2026-01-RR-SCO

Child Collections

Collection ID Name Type Short Name Submission Status
nemo:col-teva4fo Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from marmoset brain (BICAN-2026-01-RR-SCO Snapshot ATAC) files krienen_10XMultiome_marmoset_nuclei (BICAN-2026-01-RR-SCO Snapshot ATAC)
nemo:col-sxtrv4p Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from marmoset brain (BICAN-2026-01-RR-SCO Snapshot RNA) files krienen_10XMultiome_marmoset_nuclei (BICAN-2026-01-RR-SCO Snapshot RNA)

Documentation


Data Citation:

Dataset: Lakme Caceres, Shu Dan, Michael DeBerardine, Jessica Feliciano, Kirsten Levandowski, Reilly Nakamoto, Jessica Schembri, Jitendra Sharma, Atsushi Takahashi, Tsephel Thangpey, Ning Wang, Qiangge Zhang, Guoping Feng, Fenna Krienen (2024) Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from marmoset brain [Dataset]. Available from: https://assets.nemoarchive.org/nemo:col-eavx5o3