NeMO Identifier: Collection

NeMO ID: nemo:col-u8sxtko

  • Collection Name: BICAN__MetaSnapshot__2025-08-12__HMBA__aibs__nuclei__10X_genomics_multiome__nothern_tree_shrew__demultiplexed_fastq__coh-8boto7m__no_restriction
  • Short Name: BICAN__MetaSnapshot__2025-08-12__HMBA__aibs__nuclei__10X_genomics_multiome__nothern_tree_shrew__demultiplexed_fastq__coh-8boto7m__no_restriction
  • Programs: bican

COLLECTION METADATA

  • Description:
  • Collection Type: Static
  • Taxa: nothern tree shrew
  • Assays: multiome; chromatin , multiome; transcriptome
  • Anatomical Regions: entorhinal cortex , primary visual cortex (striate cortex, area V1/17)
  • Modalities: multimodal
  • Techniques: 10X genomics multiome;atac-seq , 10X genomics multiome;rnaseq
  • Specimen Type:
  • Keywords:
  • Contact:
  • Grant Numbers: UM1MH130981
  • Funding Agency: NIMH
  • URL Protocol:
  • Data Access: open

Project(s) this Collection Belongs To

ID Title
nemo:prj-t8d9ty5 Functionally guided adult whole brain cell atlas in human and NHP

Brain Region(s) of Interest

Name
entorhinal cortex
primary visual cortex (striate cortex, area V1/17)

Parent Collections

Collection ID Name Type Short Name Submission Status
nemo:col-saez0ov BICAN__MetaCumulative__2025-08-12__HMBA__aibs__nuclei__10X_genomics_multiome__nothern_tree_shrew__demultiplexed_fastq__coh-8boto7m__no_restriction collection
nemo:col-gnbwm7e BICAN-2025-09-RR-SCO collection BICAN-2025-09-RR-SCO

Child Collections

Collection ID Name Type Short Name Submission Status
nemo:col-jk6s79b BICAN__Snapshot__2025-08-12__HMBA__aibs__nuclei__10xMultiome_RNAseq__nothern_tree_shrew__demultiplexed_fastq__coh-8boto7m__no_restriction files BICAN__Snapshot__2025-08-12__HMBA__aibs__nuclei__10xMultiome_RNAseq__nothern_tree_shrew__demultiplexed_fastq__coh-8boto7m__no_restriction
nemo:col-5aexhty BICAN__Snapshot__2025-08-12__HMBA__aibs__nuclei__10xMultiome_ATACseq__nothern_tree_shrew__demultiplexed_fastq__coh-8boto7m__no_restriction files BICAN__Snapshot__2025-08-12__HMBA__aibs__nuclei__10xMultiome_ATACseq__nothern_tree_shrew__demultiplexed_fastq__coh-8boto7m__no_restriction

Documentation


Data Citation:

Dataset: Trygve Bakken, Darren Bertagnolli, Anish Bhaswanth Chakka, Rushil Chakrabarty, Nick Dee, Rebecca Ferrer, Aaron Garcia, Jeff Goldy, Junitta Guzman, Madeleine Hewitt, Daniel Hirschstein, Windy Ho, Rebecca Hodge, Katelyn James, Danielle L. Jones, Lauren Kruse, Boaz P. Levi, Brian Long, Delissa McMillen, Beagan Nguy, Nicholas Peña, Trangthanh Pham, Jessie Puckett, Matthew Schmitz, Stephanie Seeman, Nadiya V. Shapovalova, Kimberly A. Smith, Cassandra Sobieski, Michael Tieu, Amy Torkelson, Jack Waters, Morgan Wirthlin, Hongkui Zeng, Ed Lein (2024) Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from northern tree shrew brain [Dataset]. Available from: https://assets.nemoarchive.org/col-u8sxtko.

NeMO Citation:

Ament SA, Adkins RS, Carter R, Chrysostomou E, Colantuoni C, Crabtree J, Creasy HH, Degatano K, Felix V, Gandt P, Garden GA, Giglio M, Herb BR, Khajouei F, Kiernan E, McCracken C, McDaniel K, Nadendla S, Nickel L, Olley D, Orvis J, Receveur JP, Schor M, Sonthalia S, Tickle TL, Way J, Hertzano R, Mahurkar AA, White OR. The Neuroscience Multi-Omic Archive: a BRAIN Initiative resource for single-cell transcriptomic and epigenomic data from the mammalian brain. Nucleic Acids Res. 2023 Jan 6;51(D1):D1075-D1085. doi: 10.1093/nar/gkac962. PMID: 36318260; PMCID: PMC9825473