Single nucleus transcriptomic and epigenomic profiling of  mouse locus coeruleus norepinephrine and dorsal and median raphe serotonin neurons - fastq (MetaCumulative)

Program
bican
Collection Type
Dynamic
Keywords
Rapid Release

As part of the BRAIN Initiative Cell Atlas Network, multiomic atlas of Mus musculus dorsal and median raphe serotonin cells and locus coeruleus norepinephrine cells generated using 10X Genomics Multiome sequencing of microdissected DR and MR and LC. This dataset is part of spatio-molecular profiling of DR and MR and LC neuronal populations and contains expression data from neighboring populations - fastq (MetaCumulative)

Data citation
No data citation listed
Funding agency
NIMH
Grant numbers
R01MH134833
Access
open
License
CCBY4

Download URLs

  • Browse HTTP server https://data.nemoarchive.org/bican/grant/BICAN_Neuromodulation/aibs/multimodal/nuclei/10xMultiome_ATACseq/house_mouse/demultiplexed_fastq
    Raw HTTP
  • Browse HTTP server https://data.nemoarchive.org/bican/grant/BICAN_Neuromodulation/aibs/multimodal/nuclei/10xMultiome_RNAseq/house_mouse/demultiplexed_fastq
    Raw HTTP

Anatomical Regions

  • Locus ceruleus
  • Dorsal nucleus raphe
  • Central linear nucleus raphe
  • Superior central nucleus raphe, medial part

Taxa

house mouse

Projects this collection belongs to

  • nemo:prj-pv9uoga
    Structure-function cell atlas for norepinephrine and serotonin neurons

Assays, Modalities & Techniques

Assays
multiome; chromatin multiome; transcriptome
Modalities
multimodal
Techniques
10X genomics multiome;atac-seq 10X genomics multiome;rnaseq

Child collections

  • nemo:col-9p2p1z6
    Single nucleus transcriptomic and epigenomic profiling of  mouse locus coeruleus norepinephrine and dorsal and median raphe serotonin neurons - fastq (BICAN-2026-09-RR-SCO MetaSnapshot)

Parent collections

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Contributors

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Documentation & resources