Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from marmoset brain - fastq (BICAN-2026-09-RR-SCO MetaSnapshot)

Program

bican

Collection Type

Static

Keywords

Rapid Release 2026

As part of the BRAIN Initiative Cell Atlas Network, single nuclei from white-tufted-ear marmoset brain were assayed by 10X Genomics Multiome platform - fastq (BICAN-2026-09-RR-SCO MetaSnapshot)

Data citation: Dataset: Lakme Caceres, Shu Dan, Michael DeBerardine, Jessica Feliciano, Kirsten Levandowski, Reilly Nakamoto, Jessica Schembri, Jitendra Sharma, Atsushi Takahashi, Tsephel Thangpey, Ning Wang, Qiangge Zhang, Guoping Feng, Fenna Krienen (2024) Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from marmoset brain [Dataset]. Available from: https://assets.nemoarchive.org/nemo:col-upch351
Funding agency: NIMH
Grant numbers: UM1MH130981
Access: open
License: CCBY4

Download URLs

Download BDBag https://data.nemoarchive.org/bdbags/BICAN/BICAN-2026-09-RR-SCO/col-upch351__BICAN__MetaSnapshot__2026-09-25__HMBA__princeton_lein__nuclei__10X_genomics_multiome__white-tufted-ear_marmoset__demultiplexed_fastq__open__no_restriction.tgz 21,568 files 71,695.41 GB

Raw BDBag

Anatomical Regions

caudate nucleus
mediodorsal nucleus of thalamus
periaqueductal gray substance
pontine nucleus
hippocampus (hippocampal formation)
Ventral pallidus
substantia nigra
cuneate nucleus
medullary reticular formation
fimbria
head of caudate
layer I of area VP
optic chiasm
periaqueductal gray substance, ventrolateral division
Brain stem
thalamus
superior colliculus
periaqueductal gray substance, dorsolateral division
hypothalamus
gigantocellular reticular nuclei
zona incerta
rostral putamen
dorsal lateral geniculate nucleus
mammillary body
midbrain reticular formation
corpus callosum
orbito-polar tract
Pontine reticular formation
external segment of globus pallidus
hippocampal gyrus (formation)
pulvinar of thalamus
reticular nucleus of thalamus
posterior nuclear complex of thalamus
lateral pericuneate nucleus
surface structures of forebrain
bed nucleus of stria terminalis
substantia nigra, reticular part
parabrachial nuclei
spinal cord
primary visual cortex (striate cortex, area V1/17)
putamen
cerebellum
internal segment of globus pallidus
medial geniculate nuclei
anterior nuclear complex of thalamus
lateral occipito-temporal area
gracile nucleus
inferior cerebellar peduncle
inferior colliculus
mesencephalic trigeminal tract
perirhinal cortex (area 35)
brain
lateral geniculate nucleus
pons
amygdaloid complex
lateral septal nucleus
medial preoptic area
medial pericuneate nucleus
nucleus accumbens
medial nucleus of pulvinar

Taxa

white-tufted-ear marmoset

Projects this collection belongs to

nemo:prj-t8d9ty5

Functionally guided adult whole brain cell atlas in human and NHP

Assays, Modalities & Techniques

Assays: multiome; chromatin multiome; transcriptome
Modalities: multimodal
Techniques: 10X genomics multiome;atac-seq 10X genomics multiome;rnaseq

Child collections

nemo:col-rwcbsqq

Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from marmoset brain - fastq (BICAN-2026-09-RR-SCO Snapshot RNA)
nemo:col-7pwzen5

Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from marmoset brain - fastq (BICAN-2026-09-RR-SCO Snapshot ATAC)

Parent collections

nemo:col-cnav2ma

Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from marmoset brain (MetaCumulative)
collection
nemo:col-i17zvqh

BICAN Rapid Release Inventory: Single cell transcriptomics and epigenomics (BICAN-2026-09-RR-SCO)
collection

Associated publications

No publications linked yet.

URL Protocols

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Contributors

No contributors listed for Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from marmoset brain - fastq (BICAN-2026-09-RR-SCO MetaSnapshot) collection.

Cross-archive links

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