Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from northern tree shrew brain (BICAN-2024-09-RR-SCO Snapshot ATAC)

Program
bican
Collection Type
Dynamic
Specimen Type
nuclei
Keywords
Rapid Release 2024
Status
Ongoing

As part of the BRAIN Initiative Cell Atlas Network, single nuclei from northern tree shrew brain were assayed using the 10X Genomics Multiome platform. (BICAN-2024-09-RR-SCO Snapshot ATAC)

Data citation
Dataset: Trygve Bakken, Darren Bertagnolli, Anish Bhaswanth Chakka, Rushil Chakrabarty, Nick Dee, Rebecca Ferrer, Aaron Garcia, Jeff Goldy, Junitta Guzman, Madeleine Hewitt, Daniel Hirschstein, Windy Ho, Rebecca Hodge, Katelyn James, Danielle L. Jones, Lauren Kruse, Boaz P. Levi, Brian Long, Delissa McMillen, Beagan Nguy, Nicholas Peña, Trangthanh Pham, Jessie Puckett, Matthew Schmitz, Stephanie Seeman, Nadiya V. Shapovalova, Kimberly A. Smith, Cassandra Sobieski, Michael Tieu, Amy Torkelson, Jack Waters, Morgan Wirthlin, Hongkui Zeng, Ed Lein (2024) Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from northern tree shrew brain [Dataset]. Available from: https://assets.nemoarchive.org/col-xk0uv9g.
Funding agency
NIMH
Grant numbers
UM1MH130981
Access
open
License
CC BY 4.0

Download URLs

  • Download BDBag https://data.nemoarchive.org/publication_release/BICAN/UM1MH130981/aibs/BICAN_lein_10XMultiome_treeshrew_nuclei-col-xk0uv9g-2024-09-21/col-xk0uv9g_bag_2_lein_10XMultiome_treeshrew_nuclei_atac-col-wkv97dw-2024-09-21.tgz 193 files 886.41 GB
    Raw BDBag
  • Browse HTTP server https://data.nemoarchive.org/bican/grant/HMBA/lein/multimodal/sncell/10xMultiome_ATACseq/northern_tree_shrew/raw/ 193 files 886.41 GB
    Raw HTTP

Anatomical Regions

  • neocortex (isocortex)

Taxa

nothern tree shrew

Projects this collection belongs to

  • nemo:prj-t8d9ty5
    Functionally guided adult whole brain cell atlas in human and NHP

Assays, Modalities & Techniques

Assays
multiome; chromatin
Modalities
multimodal
Techniques
10X genomics multiome;atac-seq

Child collections

No child collections listed for Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from northern tree shrew brain (BICAN-2024-09-RR-SCO Snapshot ATAC) collection.

Parent collections

  • nemo:col-xk0uv9g
    Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from northern tree shrew brain (BICAN-2024-09-RR-SCO MetaSnapshot)
    files Ongoing

Associated publications

No publications linked yet.

URL Protocols

No protocol URLs listed for this collection.

Contributors

No contributors listed for Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from northern tree shrew brain (BICAN-2024-09-RR-SCO Snapshot ATAC) collection.

Cross-archive links

No cross-archive links listed for this collection.

Documentation & resources