NeMO Identifier: Collection

NeMO ID: nemo:col-xk0uv9g

  • Collection Name: Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from northern tree shrew brain (BICAN-2024-09-RR-SCO MetaSnapshot)
  • Short Name: lein_10XMultiome_treeshrew_nuclei (BICAN-2024-09-RR-SCO MetaSnapshot)
  • Programs: bican

COLLECTION METADATA

  • Description:
  • Collection Type: Dynamic
  • Taxa: nothern tree shrew
  • Assays: multiome; chromatin , multiome; transcriptome
  • Anatomical Regions: neocortex (isocortex)
  • Modalities: multimodal
  • Techniques: 10X genomics multiome;atac-seq , 10X genomics multiome;rnaseq
  • Specimen Type:
  • Keywords: BICAN , Rapid Release , 2024
  • Contact:
  • Grant Numbers: UM1MH130981
  • Funding Agency: NIMH
  • URL Protocol:
  • Data Access: open
  • Data License: CC BY 4.0
  • Submission Status: Ongoing

Project(s) this Collection Belongs To

ID Title
nemo:prj-t8d9ty5 Functionally guided adult whole brain cell atlas in human and NHP

Brain Region(s) of Interest

Name
neocortex (isocortex)

Parent Collections

Collection ID Name Type Short Name Submission Status
nemo:col-13ufcuh Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from northern tree shrew brain (MetaCumulative) collection lein_10XMultiome_treeshrew_nuclei (MetaCumulative)

Child Collections

Collection ID Name Type Short Name Submission Status
nemo:col-3ufm6tr Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from northern tree shrew brain (BICAN-2024-09-RR-SCO Snapshot RNA) files lein_10XMultiome_treeshrew_nuclei (BICAN-2024-09-RR-SCO Snapshot RNA) ongoing
nemo:col-wkv97dw Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from northern tree shrew brain (BICAN-2024-09-RR-SCO Snapshot ATAC) files lein_10XMultiome_treeshrew_nuclei (BICAN-2024-09-RR-SCO Snapshot ATAC) ongoing

Documentation


Data Citation:

Dataset: Trygve Bakken, Darren Bertagnolli, Anish Bhaswanth Chakka, Rushil Chakrabarty, Nick Dee, Rebecca Ferrer, Aaron Garcia, Jeff Goldy, Junitta Guzman, Madeleine Hewitt, Daniel Hirschstein, Windy Ho, Rebecca Hodge, Katelyn James, Danielle L. Jones, Lauren Kruse, Boaz P. Levi, Brian Long, Delissa McMillen, Beagan Nguy, Nicholas Peña, Trangthanh Pham, Jessie Puckett, Matthew Schmitz, Stephanie Seeman, Nadiya V. Shapovalova, Kimberly A. Smith, Cassandra Sobieski, Michael Tieu, Amy Torkelson, Jack Waters, Morgan Wirthlin, Hongkui Zeng, Ed Lein (2024) Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from northern tree shrew brain [Dataset]. Available from: https://assets.nemoarchive.org/col-xk0uv9g.