Human and Mammalian Brain Atlas: Single nucleus RNA-seq from human brain (10X v4 OCM) - fastq (BICAN-2026-09-RR-SCO Snapshot)

Program

bican

Collection Type

Static

Specimen Type

nuclei

Keywords

Rapid Release 2026

As part of the BRAIN Initiative Cell Atlas Network, single nuclei from human brain were assayed using 10X v4 OCM sequencing- fastq (BICAN-2026-09-RR-SCO Snapshot)

Data citation: Dataset (fastq): Beagan Nguy, Anish Bhaswanth Chakka, Jeff Goldy, Rushil Chakrabarty, Michael Tieu, Darren Bertagnolli, Kimberly A. Smith, Amy Torkelson, Katelyn James, Junitta Guzman, Rebecca Ferrer, Trangthanh Pham, Nick Dee, Tamara Casper, Michael Clark, Jessica Gloe, Rachel McCue, Windy Ho, Alex Tran, Elliot Phillips, Madhav Kannan, Dan Yuan, Alvin Huang, Matthew Jungert, Kathryn Jordan, Rebecca Hodge, Aaron Garcia, Cassandra Sobieski, Boaz P. Levi, Nadiya V. Shapovalova, Daniel Hirschstein, Nicholas Peña, Danielle L. Jones, Lauren Kruse, Inkar Kapen, Trygve Bakken, Nelson Johansen, Yuanyuan Fu, Zizhen Yao, Changkyu Lee, Ed Lein, Hongkui Zeng (2026) Human and Mammalian Brain Atlas: Single nucleus RNA-seq from human brain (10X v4 OCM) [Dataset - fastq]. Available from: https://assets.nemoarchive.org/nemo:col-ybuqxp4
Funding agency: NIMH
Grant numbers: UM1MH130981
Access: open
License: BICAN-BY-NR

Download URLs

Download BDBag https://data.nemoarchive.org/bdbags/BICAN/BICAN-2026-09-RR-SCO/col-ybuqxp4__BICAN__Snapshot__2026-09-25__HMBA__aibs__nuclei__10x_v4-OCM__human__demultiplexed_fastq__open__no_restriction.tgz 640 files 3,267.26 GB

Raw BDBag

Anatomical Regions

reticular nucleus of thalamus
dorsal division of basomedial nucleus
stratum pyramidale of rostral CA2
paracentral nucleus of thalamus
magnocellular division of VA
rostral presubiculum
intermediate division of basolateral nucleus
lateral subdivision of central nucleus
medial (posterior) entorhinal cortex
rostral prosubiculum
granular layer of rostral dentate gyrus
anteromedial nucleus of thalamus
amygdalocortical (corticoamygdaloid) transition area
distal parasubiculum
caudal prosubiculum
rostral subiculum
parvocellular division of VA
paralaminar nucleus
polyform layer of rostral dentate gyrus
stratum pyramidale of caudal CA2
dorsal division of lateral nucleus
granular layer of caudal dentate gyrus
fasciculosus nucleus of thalamus
caudal subiculum
stratum pyramidale of rostral CA3
stratum pyramidale of rostral CA1
anteroventral nucleus of thalamus
amygdalostriatal transition area
stratum pyramidale of caudal CA3
pyramidal cells of rostral CA4
zona incerta
paraventricular nucleus
stratum pyramidale of uncal CA3
caudal presubiculum (postsubiculum)
endopiriform nucleus
lateral (anterior) entorhinal cortex
venrtral subdivision of CoP
stratum pyramidale of uncal CA2
stratum pyramidale of caudal CA1
pyramidal cells of caudal CA4

Taxa

human

Projects this collection belongs to

nemo:prj-t8d9ty5

Functionally guided adult whole brain cell atlas in human and NHP

Assays, Modalities & Techniques

Assays: transcriptome
Modalities: transcriptome
Techniques: 10x Chromium 3' v4-OCM sequencing

Child collections

No child collections listed for Human and Mammalian Brain Atlas: Single nucleus RNA-seq from human brain (10X v4 OCM) - fastq (BICAN-2026-09-RR-SCO Snapshot) collection.

Parent collections

nemo:col-5t9f7qv

Human and Mammalian Brain Atlas: Single nucleus RNA-seq from human brain (10X v4 OCM) - fastq (Cumulative)
collection
nemo:col-i17zvqh

BICAN Rapid Release Inventory: Single cell transcriptomics and epigenomics (BICAN-2026-09-RR-SCO)
collection

Associated publications

No publications linked yet.

URL Protocols

No protocol URLs listed for this collection.

Contributors

No contributors listed for Human and Mammalian Brain Atlas: Single nucleus RNA-seq from human brain (10X v4 OCM) - fastq (BICAN-2026-09-RR-SCO Snapshot) collection.

Cross-archive links

No cross-archive links listed for this collection.