NeMO Identifier: Collection

NeMO ID: nemo:dat-aqicdbo

  • Collection Name: Molecular zonation of the human striatum across cell types and people
  • Short Name:
  • Programs: bican

COLLECTION METADATA

  • Description:
  • Collection Type: Dynamic
  • Taxa: human
  • Assays: transcriptome , spatial transcriptome
  • Anatomical Regions: striatum
  • Modalities: transcriptome , multimodal
  • Techniques: 10x Chromium 3' v4 sequencing , 10x chromium 5' v3 sequencing , Slide-tag std 10x 5' v2 sequencing
  • Specimen Type:
  • Keywords: Basal Ganglia , Striatum , Spatial transcriptomics , Brain Health , Aging
  • Contact:
  • Grant Numbers: UM1MH130966
  • Funding Agency: NIMH
  • URL Protocol:
  • Data Access: open
  • Data License: CC BY 4.0

Data associated with this Publication

DOI Year PubMed ID Journal Vol:Page

Contributors

Name Organization ORCID
Katelyn Flowers Broad Institute
Evan Macosko Broad Institute 0000-0002-2794-5165
Steven McCarroll Harvard University 0000-0002-6954-8184
Fei Chen Broad Institute
Steven Burger Broad Institute
Matthew Lee Broad Institute
Andrew Kraft
Nirmala Rayan
Julianna Milidantri
Haoyuan Gao
Charles Vanderburg
Karol Balderrama
Naeem Nadaf
Vipin Kumar
Emily Finn
Matthew Shabet
Ezra Muratoglu
Olivia Yoo
Khalid Shakir
Lucas Reese
James Nemesh
Sadie Drouin
Olivia Catalini
Nikita Budnik
Kiku Ichihara

Project(s) this Collection Belongs To

ID Title
nemo:prj-hqeuy8h An Atlas of Human Brain Cell Variation

Brain Region(s) of Interest

Name
striatum

Parent Collections

Collection ID Name Type Short Name Submission Status
nemo:col-n6b0x7w BICAN Basal Ganglia package collection BICAN Basal Ganglia package ongoing

Documentation


NeMO Citation:

Ament SA, Adkins RS, Carter R, Chrysostomou E, Colantuoni C, Crabtree J, Creasy HH, Degatano K, Felix V, Gandt P, Garden GA, Giglio M, Herb BR, Khajouei F, Kiernan E, McCracken C, McDaniel K, Nadendla S, Nickel L, Olley D, Orvis J, Receveur JP, Schor M, Sonthalia S, Tickle TL, Way J, Hertzano R, Mahurkar AA, White OR. The Neuroscience Multi-Omic Archive: a BRAIN Initiative resource for single-cell transcriptomic and epigenomic data from the mammalian brain. Nucleic Acids Res. 2023 Jan 6;51(D1):D1075-D1085. doi: 10.1093/nar/gkac962. PMID: 36318260; PMCID: PMC9825473