NeMO Identifier: Collection

NeMO ID: nemo:dat-kkuxhz4

  • Collection Name: "An integrated spatial, transcriptomic, and regulatory atlas of the marmoset subcortex"
  • Short Name:
  • Programs: bican

COLLECTION METADATA

  • Description:
  • Collection Type: Dynamic
  • Taxa: white-tufted-ear marmoset
  • Assays: multiome; chromatin , multiome; transcriptome
  • Anatomical Regions: cerebral subcortex
  • Modalities: multimodal
  • Techniques: 10X genomics multiome;atac-seq , 10X genomics multiome;rnaseq
  • Specimen Type:
  • Keywords: multiomics , subcortex , primate
  • Contact: Fenna Krienen
  • Grant Numbers: UM1MH130981
  • Funding Agency: NIMH
  • URL Protocol:
  • Data Access: open
  • Data License: CC BY 4.0

Data associated with this Publication

DOI Year PubMed ID Journal Vol:Page

Contributors

Name Organization ORCID
Guoping Feng McGovern Institute for Brain Research 0000-0002-8021-277X
Fenna Krienen Harvard University 0000-0002-1400-6820
Fenna M Krienen Harvard University 0000-0002-1400-6820
Ed Lein Allen Institute 0000-0001-9012-6552
Hongkui Zeng Allen Institute 0000-0002-0326-5878
Meghan A Turner
Victor E Nieto Caballero
Jessica Schembri
Reilly Nakamoto
Qiangge Zhang
Kirsten Levandowski
Burke Q Rosen
Delissa A McMillen
Naomi Martin
Nasmil Valera Cuevas
Paul Olsen
Josh Nagra
Jazmin Campos
Marshall M VanNess
Jack Waters
Shea Ransford
Zoe Juneau
Sam Hastings
Tim Coalson
John Harwell
Takuya Hayashi
David Van Essen
Boudewijn Lelieveldt
Brian Long
Shu Dan
Michael DeBerardine
Lakme Caceres

Project(s) this Collection Belongs To

ID Title
nemo:prj-t8d9ty5 Functionally guided adult whole brain cell atlas in human and NHP

Brain Region(s) of Interest

Name
cerebral subcortex

Documentation

PLEASE CITE NeMO DATA AS FOLLOWS:

Ament SA, Adkins RS, Carter R, Chrysostomou E, Colantuoni C, Crabtree J, Creasy HH, Degatano K, Felix V, Gandt P, Garden GA, Giglio M, Herb BR, Khajouei F, Kiernan E, McCracken C, McDaniel K, Nadendla S, Nickel L, Olley D, Orvis J, Receveur JP, Schor M, Sonthalia S, Tickle TL, Way J, Hertzano R, Mahurkar AA, White OR. The Neuroscience Multi-Omic Archive: a BRAIN Initiative resource for single-cell transcriptomic and epigenomic data from the mammalian brain. Nucleic Acids Res. 2023 Jan 6;51(D1):D1075-D1085. doi: 10.1093/nar/gkac962. PMID: 36318260; PMCID: PMC9825473