A Single-Cell and Spatial 3D Multi-omic Atlas of Developing Human Basal Ganglia and Inhibitory Neurons

Program
bican
Collection Type
Dynamic
Keywords
Basal Ganglia

"The study generated 155,225 new snm3C-seq profiles sampled from nine developing brains. The dissected brain regions include the lateral ganglionic eminence (LGE), medial ganglionic eminence (MGE), caudal ganglionic eminence (CGE), putamen (Pu), caudate (Ca), globus pallidus (GP), ventricular zone (VZ), dorsallateral prefrontal (DFC), ventrolateral prefrontal (VFC), frontal (FCx), orbital frontal (OFC), temporal (TCx), cingulate (CCx), insular (ICx) cortices, postcentral gyrus (PoCG), and the hippocampus (HIP)."

Data citation
No data citation listed
Funding agency
NIMH
Grant numbers
U01MH130995
Access
open
License
BICAN-BY-NR

Download URLs

  • Browse HTTP server https://data.nemoarchive.org/bican/grant/BICAN_Dev_Multiomics/ucla_luo/epigenome/nuclei/m3C_seq/human/demultiplexed_fastq/ 9,440 files 29,197.48 GB
    Raw HTTP
  • Browse HTTP server https://data.nemoarchive.org/bican/grant/BICAN_Dev_Multiomics/ucla_luo/transcriptome/cells/CosMx/human/spatial_coordinates/
    Raw HTTP

Anatomical Regions

No anatomical region listed for A Single-Cell and Spatial 3D Multi-omic Atlas of Developing Human Basal Ganglia and Inhibitory Neurons collection.

Taxa

human

Projects this collection belongs to

  • nemo:prj-vwtwc3r
    Spatiotemporal epigenomic and chromosomal architectural cell atlas of developing human brains

Assays, Modalities & Techniques

Assays
spatial transcriptome methylation
Modalities
transcriptome epigenome
Techniques
m3c-seq CosMx

Child collections

  • nemo:col-ogwp1u8
    A Single-Cell and Spatial 3D Multi-omic Atlas of Developing Human Basal Ganglia and Inhibitory Neurons (CosMx data)
  • nemo:col-vbytego
    A Single-Cell and Spatial 3D Multi-omic Atlas of Developing Human Basal Ganglia and Inhibitory Neurons (m3Cseq raw data)

Parent collections

Associated publications

No publications linked yet.

URL Protocols

No protocol URLs listed for this collection.

Contributors

  • Matthew G Heffel No affiliation listed 0009-0000-1858-8736
  • Heng Xu No affiliation listed
  • Oier Pastor Alonso No affiliation listed
  • Xinzhe Li No affiliation listed
Show 13 more contributors
  • Runjia Li No affiliation listed
  • Yi Zhang No affiliation listed
  • Joonho Kum No affiliation listed
  • Min-Jen Tsai No affiliation listed
  • Zachary von Behren No affiliation listed
  • Eleazar Eskin No affiliation listed
  • Bogdan Pasaniuc No affiliation listed
  • Jason Ernst No affiliation listed
  • Bogdan Bintu No affiliation listed
  • Quan Zhu No affiliation listed
  • Eran Mukamel University of California, San Diego 0000-0003-3203-9535
  • Mercedes F Paredes No affiliation listed
  • Chongyuan Luo University of California, Los Angeles 0000-0002-8541-0695

Cross-archive links

No cross-archive links listed for this collection.

Documentation & resources