NeMO Identifier: Collection

NeMO ID: nemo:dat-pu20xdm

  • Collection Name: Inter-individual variation of the adult human striatum
  • Short Name:
  • Programs: bican

COLLECTION METADATA

  • Description:
  • Collection Type: Dynamic
  • Taxa: human
  • Assays: transcriptome
  • Anatomical Regions: dorsolateral prefrontal cortex , caudate nucleus , nucleus accumbens , putamen
  • Modalities: transcriptome
  • Techniques: 10x Chromium 3' v4 sequencing
  • Specimen Type:
  • Keywords: human , Striatum , cortex , Basal Ganglia , caudate , putamen , nucleus accumbens , internal capsule
  • Contact: Olivia Yoo
  • Grant Numbers: UM1MH130966
  • Funding Agency: NIMH
  • URL Protocol:
  • Data Access: open

Contributors

Name Organization ORCID
Katelyn Flowers Broad Institute
Melissa Goldman Harvard University
Evan Macosko Broad Institute 0000-0002-2794-5165
Steven A McCarroll Harvard University 0000-0002-6954-8184
Steven Burger Broad Institute
Matthew Lee Broad Institute
Marina Hogan Broad Institute 0009-0005-8402-9672
Andrew Kraft
Nirmala Rayan
Julianna Milidantri
Haoyuan Gao
Charles Vanderburg
Karol Balderrama
Naeem Nadaf
Vipin Kumar
Emily Finn
Matthew Shabet
Ezra Muratoglu
Olivia Yoo
Khalid Shakir
Lucas Reese
James Nemesh
Sadie Drouin
Olivia Catalini
Nikita Budnik
Kiku Ichihara
Seva Kashin
Curtis Mello
Liv Spina
Kathleen Kim
Haley Fritch
Tracy Yuan
Giulio Genovese
Bennett Ferris
Stephen Fleming
Mehrtash Babadi
Yang Xu
Nicole Rockweiler
Alec Wysoker
Fedor Grab
Lauren Macaisa
Madelynn Coe
Riyaan Gunaratne
Catherine Crombie
Mukund Raj
Jonah Silverman
Nafiseh Yavari
Valerie Foley

Project(s) this Collection Belongs To

ID Title
nemo:prj-hqeuy8h An Atlas of Human Brain Cell Variation

Brain Region(s) of Interest

Name
dorsolateral prefrontal cortex
caudate nucleus
nucleus accumbens
putamen

Parent Collections

Collection ID Name Type Short Name Submission Status
nemo:col-n6b0x7w BICAN Basal Ganglia package collection BICAN Basal Ganglia package ongoing

Documentation


NeMO Citation:

Ament SA, Adkins RS, Carter R, Chrysostomou E, Colantuoni C, Crabtree J, Creasy HH, Degatano K, Felix V, Gandt P, Garden GA, Giglio M, Herb BR, Khajouei F, Kiernan E, McCracken C, McDaniel K, Nadendla S, Nickel L, Olley D, Orvis J, Receveur JP, Schor M, Sonthalia S, Tickle TL, Way J, Hertzano R, Mahurkar AA, White OR. The Neuroscience Multi-Omic Archive: a BRAIN Initiative resource for single-cell transcriptomic and epigenomic data from the mammalian brain. Nucleic Acids Res. 2023 Jan 6;51(D1):D1075-D1085. doi: 10.1093/nar/gkac962. PMID: 36318260; PMCID: PMC9825473