NeMO Identifier: Collection

NeMO ID: nemo:dat-rrstbt3

  • Collection Name: Single-Cell Analysis of Chromatin State and Transcriptome in Human Basal Ganglia
  • Short Name:
  • Programs: bican

COLLECTION METADATA

  • Description:
  • Collection Type: Dynamic
  • Taxa: human
  • Assays: spatial transcriptome , multiome; chromatin , multiome; transcriptome
  • Anatomical Regions: basal ganglia
  • Modalities: multimodal
  • Techniques: droplet paired-tag; DNA , droplet paired-tag; RNA
  • Specimen Type:
  • Keywords: single-cell , histone modifications , H3K27ac , H3K27me3 , H3K9me3 , epigenome , chromatin conformation , single-cell multiomics , deep learning model , psychiatric diseases , neurological disorders
  • Contact:
  • Grant Numbers: UM1MH130994
  • Funding Agency: NIMH
  • URL Protocol:
  • Data Access: open
  • Data License: CC BY 4.0

Data associated with this Publication

DOI Year PubMed ID Journal Vol:Page

Contributors

Name Organization ORCID
Lei Chang University of California, San Deigo 0000-0002-2606-3347
Yang Xie University of California, San Deigo 0000-0002-7453-6786
Kai Li
Guojie Zhong
Jonathan A Rink
Cindy Tatiana Báez-Becerra
Audrey Lie
Hannah S Indralingam
Keyi Dong
Timothy Loe
Zhaoning Wang University of California, San Diego 0000-0002-0290-4746
Songpeng Zu
Joseph Colin Kern
Zoey Zhao
Eric Boone
Jesus Fluores
Alexander Monell
Jacquelin Olness
Chenxu Zhu
Xiaomeng Gao
Ariana S Barcoma
Jackson K Willier
Kyle W Knutson
Kaitlyn G Russo
Jiayi Liu
Silvia Cho
Jessica Arzavala
Carissa K Young
Yareli Sanchez
Aleksandra Bikkina
Carolyn O’Connor
Michelle Liem
Mikayla V Marrin
Cynthia Rose
Shane N Alt
Natalie Schenker-Ahmed
Wubin Ding 0000-0002-5355-7561
Amit Klein 0000-0002-5898-6592
Anna Bartlett
Rosa Gomez Castanon
Joseph Nery Salk Institute for Biological Studies 0000-0003-0153-5659
Wei Tian Salk Institute for Biological Studies
Alaina Petrella
Jordan Altshul
Derek Chan
Andrea Saldana Acerbo
Chumo Chen
Emma Osgood
William Owens
Jammy Luo
Eshaan Soma
Manya Jain
Sarah Velazquez
Cesar Barragan
Manoj Hariharan
Jillian Berry
Nelson Johansen
Yuanyuan Fu Allen Institute for Brain Science 0000-0001-5934-6573
Trygve Bakken Allen Institute 0000-0003-3373-7386
Rebecca D Hodge
Anna Marie Yanny
Julie Nyhus
Nicholas Dee Allen Institute for Brain Science 0000-0002-2831-9254
Tamara Casper Allen Institute for Brain Science 0000-0003-1638-3651
Nadiya Shapovalova
Daniel Hirschstein
Boaz Levi
C Dirk Keene
Ed S Lein Allen Institute 0000-0001-9012-6552
Daofeng Li
Quan Zhu
Ting Wang Washington University School of Medicine 0000-0002-6800-242X
Xiangmin Xu University of California, Irvine 0000-0002-5828-1533
Joseph R Ecker Salk Institute for Biological Studies 0000-0001-5799-5895
Margarita Behrens Salk Institute 0000-0002-7168-8186
Bing Ren University of California, San Diego 0000-0002-5435-1127

Project(s) this Collection Belongs To

ID Title
nemo:prj-butzji4 Center for Multiomic Human Brain Cell Atlas

Brain Region(s) of Interest

Name
basal ganglia

Parent Collections

Collection ID Name Type Short Name Submission Status
nemo:col-n6b0x7w BICAN Basal Ganglia package collection BICAN Basal Ganglia package ongoing

Documentation