NeMO Identifier: Collection

NeMO ID: nemo:dat-rrstbt3

  • Collection Name: Single-Cell Analysis of Chromatin State and Transcriptome in Human Basal Ganglia
  • Short Name:
  • Programs: bican

COLLECTION METADATA

  • Description:
  • Collection Type: Dynamic
  • Taxa: human
  • Assays: spatial transcriptome , multiome; chromatin , multiome; transcriptome
  • Anatomical Regions: basal ganglia
  • Modalities: multimodal
  • Techniques: droplet paired-tag; DNA , droplet paired-tag; RNA
  • Specimen Type:
  • Keywords: single-cell , histone modifications , H3K27ac , H3K27me3 , H3K9me3 , epigenome , chromatin conformation , single-cell multiomics , deep learning model , psychiatric diseases , neurological disorders
  • Contact:
  • Grant Numbers: UM1MH130994
  • Funding Agency: NIMH
  • URL Protocol:
  • Data Access: open
  • Data License: CC BY 4.0

Data associated with this Publication

DOI Year PubMed ID Journal Vol:Page

Contributors

Name Organization ORCID
Trygve Bakken Allen Institute 0000-0003-3373-7386
Joseph R Ecker Salk Institute for Biological Studies 0000-0001-5799-5895
Ed S Lein Allen Institute 0000-0001-9012-6552
Bing Ren University of California, San Diego 0000-0002-5435-1127
Wei Tian Salk Institute for Biological Studies
Zhaoning Wang University of California, San Diego 0000-0002-0290-4746
Margarita Behrens Salk Institute 0000-0002-7168-8186
Ting Wang Washington University School of Medicine 0000-0002-6800-242X
Xiangmin Xu University of California, Irvine 0000-0002-5828-1533
Joseph Nery Salk Institute for Biological Studies 0000-0003-0153-5659
Tamara Casper Allen Institute for Brain Science 0000-0003-1638-3651
Nick Dee Allen Institute for Brain Science 0000-0002-2831-9254
Yuanyuan Fu Allen Institute for Brain Science 0000-0001-5934-6573
Lei Chang University of California, San Deigo 0000-0002-2606-3347
Yang Xie University of California, San Deigo 0000-0002-7453-6786
Guojie Zhong
Jonathan A Rink
Cindy Tatiana Báez-Becerra
Hannah S Indralingam
Songpeng Zu
Joseph Colin Kern
Zoey Zhao
Eric Boone
Jesus Fluores
Alexander Monell
Jacquelin Olness
Chenxu Zhu
Xiaomeng Gao
Jessica Arzavala
Natalie Schenker
Amit Klein
Anna Bartlett
Rosa Gomez Castanon
Alaina Petrella
Jordan Altshul
Derek Chan
Andrea Saldana Acerbo
Emma Osgood
Jammy Luo
Eshaan Soma
Manya Jain
Sarah Velazquez
Manoj Hariharan
Jillian Berry
Quan Zhu
Anna Marie Yanny
Daniel Hirschstein
Rebecca D Hodge
Wubin Ding
Kai Li
Audrey Lie
Keyi Dong
Timothy Loe
Daofeng Li
Ariana S Barcoma
Jackson K Willier
Kyle W Knutson
Kaitlyn G Russo
Jiayi Liu
Silvia Cho
Carissa K Young
Yareli Sanchez
Aleksandra Bikkina
Cesar Barragan
Chumo Chen
William Owens
Carolyn O’Connor
Michelle Liem
Mikayla V Marrin
Cynthia Rose
Shane N Alt
Julie Nyhus
Nadiya Shapovalova
Boaz Levi
C Dirk Keene
Nelson Johansen

Project(s) this Collection Belongs To

ID Title
nemo:prj-butzji4 Center for Multiomic Human Brain Cell Atlas

Brain Region(s) of Interest

Name
basal ganglia

Parent Collections

Collection ID Name Type Short Name Submission Status
nemo:col-n6b0x7w BICAN Basal Ganglia package collection BICAN Basal Ganglia package ongoing

Documentation


NeMO Citation:

Ament SA, Adkins RS, Carter R, Chrysostomou E, Colantuoni C, Crabtree J, Creasy HH, Degatano K, Felix V, Gandt P, Garden GA, Giglio M, Herb BR, Khajouei F, Kiernan E, McCracken C, McDaniel K, Nadendla S, Nickel L, Olley D, Orvis J, Receveur JP, Schor M, Sonthalia S, Tickle TL, Way J, Hertzano R, Mahurkar AA, White OR. The Neuroscience Multi-Omic Archive: a BRAIN Initiative resource for single-cell transcriptomic and epigenomic data from the mammalian brain. Nucleic Acids Res. 2023 Jan 6;51(D1):D1075-D1085. doi: 10.1093/nar/gkac962. PMID: 36318260; PMCID: PMC9825473