NeMO Identifier: Collection

NeMO ID: nemo:dat-xdoyka7

  • Collection Name: "Spatial and Molecular Consensus Atlas of Spinal Cord Cell Types in Mouse, Macaque, and Human"
  • Short Name:
  • Programs: bican

COLLECTION METADATA

  • Description:
  • Collection Type: Dynamic
  • Taxa: human , pig-tailed macaque , house mouse
  • Assays: transcriptome , multiome; chromatin , multiome; transcriptome
  • Anatomical Regions: spinal cord
  • Modalities: transcriptome , multimodal
  • Techniques: 10X genomics multiome;atac-seq , 10X genomics multiome;rnaseq , 10x Chromium 3' v4 sequencing
  • Specimen Type:
  • Keywords: Spinal Cord , Spatial transcriptomics , comparative genomics , comparative epigenomics , deep learning , DNA sequence modeling , multi-omics integrative , Motor neurons
  • Contact: Matthew Schmitz
  • Grant Numbers: UM1MH130981
  • Funding Agency: NIMH
  • URL Protocol:
  • Data Access: open
  • Data License: CC BY 4.0

Data associated with this Publication

DOI Year PubMed ID Journal Vol:Page

Contributors

Name Organization ORCID
Trygve E Bakken Allen Institute 0000-0003-3373-7386
Ed S Lein Allen Institute 0000-0001-9012-6552
Bosiljka Tasic Allen Institute 0000-0002-6861-4506
Cindy Van Velthoven Allen Institute 0000-0001-5120-4546
Zizhen Yao Allen Institute 0000-0002-9361-5607
Jonathan T Ting Allen Institute 0000-0001-8266-0392
Song-Lin Ding Allen Institute 0000-0002-7072-5272
Jeff Goldy Allen Institute for Brain Science 0000-0001-5140-6922
Madeleine Hewitt Allen Institute for Brain Science 0000-0002-4387-327X
Yuan Gao Allen Institute for Brain Science
Helen Lai UT Southwestern Medical Center 0000-0003-4334-0243
Nelson J Johansen Allen Institute for Brain Science 0000-0002-4436-969X
Yuanyuan Fu Allen Institute for Brain Science 0000-0001-5934-6573
Matthew Schmitz Allen Institute for Brain Science 0000-0002-6177-8161
Katie Fancher
Olivia Gautier
Michael J Leone
Zack Lewis
Ariana Nawaby
Myung-Chul Noh
Patrick Ray
Aaron D Gitler
Andreas Pfenning
Allan-Hermann Pool
Denise Ramirez
Rebecca Seal
Inkar Kapen
Ashwin Bhandiwad
Delissa McMillen
Stephanie Seeman
Lydia Ng
Tanya Daigle
Kimberly Smith
Rebecca D Hodge
Niklas Kempynck

Project(s) this Collection Belongs To

ID Title
nemo:prj-t8d9ty5 Functionally guided adult whole brain cell atlas in human and NHP

Brain Region(s) of Interest

Name
spinal cord

Parent Collections

Collection ID Name Type Short Name Submission Status
nemo:col-n6b0x7w BICAN Basal Ganglia package collection BICAN Basal Ganglia package ongoing

Documentation