NeMO Identifier: Collection

NeMO ID: nemo:dat-xdoyka7

  • Collection Name: "Spatial and Molecular Consensus Atlas of Spinal Cord Cell Types in Mouse, Macaque, and Human"
  • Short Name:
  • Programs: bican

COLLECTION METADATA

  • Description:
  • Collection Type: Dynamic
  • Taxa: human , pig-tailed macaque , house mouse
  • Assays: transcriptome , multiome; chromatin , multiome; transcriptome
  • Anatomical Regions: spinal cord
  • Modalities: transcriptome , multimodal
  • Techniques: 10X genomics multiome;atac-seq , 10X genomics multiome;rnaseq , 10x Chromium 3' v4 sequencing
  • Specimen Type:
  • Keywords: Spinal Cord , Spatial transcriptomics , comparative genomics , comparative epigenomics , deep learning , DNA sequence modeling , multi-omics integrative , Motor neurons
  • Contact: Matthew Schmitz
  • Grant Numbers: UM1MH130981
  • Funding Agency: NIMH
  • URL Protocol:
  • Data Access: open
  • Data License: CC BY 4.0

Data associated with this Publication

DOI Year PubMed ID Journal Vol:Page

Contributors

Name Organization ORCID
Trygve E Bakken Allen Institute 0000-0003-3373-7386
Ed S Lein Allen Institute 0000-0001-9012-6552
Bosiljka Tasic Allen Institute 0000-0002-6861-4506
Cindy Van Velthoven Allen Institute 0000-0001-5120-4546
Zizhen Yao Allen Institute 0000-0002-9361-5607
Jonathan T Ting Allen Institute 0000-0001-8266-0392
Song-Lin Ding Allen Institute 0000-0002-7072-5272
Jeff Goldy Allen Institute for Brain Science 0000-0001-5140-6922
Madeleine Hewitt Allen Institute for Brain Science 0000-0002-4387-327X
Yuan Gao Allen Institute for Brain Science
Helen Lai UT Southwestern Medical Center 0000-0003-4334-0243
Nelson J Johansen Allen Institute for Brain Science 0000-0002-4436-969X
Yuanyuan Fu Allen Institute for Brain Science 0000-0001-5934-6573
Matthew Schmitz Allen Institute for Brain Science 0000-0002-6177-8161
Katie Fancher
Olivia Gautier
Michael J Leone
Zack Lewis
Ariana Nawaby
Myung-Chul Noh
Patrick Ray
Aaron D Gitler
Andreas Pfenning
Allan-Hermann Pool
Denise Ramirez
Rebecca Seal
Inkar Kapen
Ashwin Bhandiwad
Delissa McMillen
Stephanie Seeman
Lydia Ng
Tanya Daigle
Kimberly Smith
Rebecca D Hodge
Niklas Kempynck

Project(s) this Collection Belongs To

ID Title
nemo:prj-t8d9ty5 Functionally guided adult whole brain cell atlas in human and NHP

Brain Region(s) of Interest

Name
spinal cord

Documentation

PLEASE CITE NeMO DATA AS FOLLOWS:

Ament SA, Adkins RS, Carter R, Chrysostomou E, Colantuoni C, Crabtree J, Creasy HH, Degatano K, Felix V, Gandt P, Garden GA, Giglio M, Herb BR, Khajouei F, Kiernan E, McCracken C, McDaniel K, Nadendla S, Nickel L, Olley D, Orvis J, Receveur JP, Schor M, Sonthalia S, Tickle TL, Way J, Hertzano R, Mahurkar AA, White OR. The Neuroscience Multi-Omic Archive: a BRAIN Initiative resource for single-cell transcriptomic and epigenomic data from the mammalian brain. Nucleic Acids Res. 2023 Jan 6;51(D1):D1075-D1085. doi: 10.1093/nar/gkac962. PMID: 36318260; PMCID: PMC9825473