NeMO Identifier: Collection

NeMO ID: nemo:dat-n5emc24

  • Collection Name: A Single-Cell and Spatial 3D Multi-omic Atlas of Developing Human Basal Ganglia and Inhibitory Neurons
  • Short Name:
  • Programs: bican

COLLECTION METADATA

  • Description:
  • Collection Type: Dynamic
  • Taxa: human
  • Assays: spatial transcriptome , methylation
  • Anatomical Regions:
  • Modalities: transcriptome , epigenome
  • Techniques: m3c-seq , CosMx
  • Specimen Type:
  • Keywords: Basal Ganglia
  • Contact: Chongyuan Luo ORCID iD icon
  • Grant Numbers: U01MH130995
  • Funding Agency: NIMH
  • URL Protocol:
  • Data Access: open
  • Data License: BICAN-BY-NR

Contributors

Name Organization ORCID
Matthew G Heffel ORCID iD icon 0009-0000-1858-8736
Heng Xu
Oier Pastor Alonso
Xinzhe Li
Runjia Li
Yi Zhang
Joonho Kum
Min-Jen Tsai
Zachary von Behren
Eleazar Eskin
Bogdan Pasaniuc
Jason Ernst
Bogdan Bintu
Quan Zhu
Eran Mukamel University of California, San Diego ORCID iD icon 0000-0003-3203-9535
Mercedes F Paredes
Chongyuan Luo University of California, Los Angeles ORCID iD icon 0000-0002-8541-0695

Project(s) this Collection Belongs To

ID Title
nemo:prj-vwtwc3r Spatiotemporal epigenomic and chromosomal architectural cell atlas of developing human brains

Parent Collections

Collection ID Name Type Short Name Submission Status
nemo:col-n6b0x7w BICAN Basal Ganglia package collection BICAN Basal Ganglia package ongoing

Child Collections

Collection ID Name Type Short Name Submission Status
nemo:col-ogwp1u8 A Single-Cell and Spatial 3D Multi-omic Atlas of Developing Human Basal Ganglia and Inhibitory Neurons (CosMx data) files luo_ucsf_cosmx_human
nemo:col-vbytego A Single-Cell and Spatial 3D Multi-omic Atlas of Developing Human Basal Ganglia and Inhibitory Neurons (m3Cseq raw data) files luo_m3Cseq_human_nuclei_dat-n5emc24 (Raw)

Documentation