NeMO Identifier: Collection

NeMO ID: nemo:col-3kyvdj3

  • Collection Name: BICAN__MetaSnapshot__2026-01-15__HMBA__aibs__nuclei__10X_genomics_multiome__rhesus_macaque__demultiplexed_fastq__open__no_restriction
  • Short Name: BICAN__MetaSnapshot__2026-01-15__HMBA__aibs__nuclei__10X_genomics_multiome__rhesus_macaque__demultiplexed_fastq__open__no_restriction
  • Programs: bican

COLLECTION METADATA

  • Description:
  • Collection Type: Static
  • Taxa: rhesus macaque
  • Assays: multiome; chromatin , multiome; transcriptome
  • Anatomical Regions: ventral group of lateral nucleus , mediodorsal nucleus of thalamus , septal nuclei , islands of Calleja , shell of nucleus accumbens , core of nucleus accumbens , lateral nuclear complex of thalamus , hindbrain (rhombencephalon) , Ventral pallidus , basal nucleus of Meynert , olfactory tubercle , anterior amygdaloid area , lateral hemisphere, anterior lobe portion , vermis, flocculonodular lobe portion (nodulus) , presubicular cortex (presubiculum) , inferior olive , head of caudate , tail of caudate , basolateral nuclear group , superior colliculus , posteroventral putamen , intralaminar nuclear complex , hypothalamus , lateral hemisphere, posterior lobe portion , subicular cortex , midbrain (mesencephalon) , dentate area (dentate gyrus) , external segment of globus pallidus , body of caudate , pulvinar of thalamus , reticular nucleus of thalamus , corticomedial nuclear group , posterior nuclear complex of thalamus , bed nucleus of stria terminalis , subiculum , lateral nucleus , subgenual (subcallosal) division of MFC (area 25) , hippocampal proper , laterodorsal portion of STH , paravermis, anterior lobe portion , primary visual cortex (striate cortex, area V1/17) , cerebellar deep nuclei , vermis, anterior lobe portion , putamen , internal segment of globus pallidus , posterior group of intralaminar nuclei , medial geniculate nuclei , pyramidal part of medulla oblongata , anterior nuclear complex of thalamus , lateral hemisphere, flocculonodular lobe portion , paravermis, posterior lobe portion , lateroventral portion of STH , lateral geniculate nucleus , entorhinal cortex , pons , fastigial (medial) nucleus , amygdaloid complex , central lateral nucleus of the thalamus , medial nuclear complex of thalamus , amygdalohippocampal transition area , substantia innominata , dentate (lateral) nucleus , myelencephalon (medulla oblongata) , substantia nigra, reticular part , vermis, posterior lobe portion
  • Modalities: multimodal
  • Techniques: 10X genomics multiome;atac-seq , 10X genomics multiome;rnaseq
  • Specimen Type:
  • Keywords:
  • Contact:
  • Grant Numbers: UM1MH130981
  • Funding Agency: NIMH
  • URL Protocol:
  • Data Access: open

Project(s) this Collection Belongs To

ID Title
nemo:prj-t8d9ty5 Functionally guided adult whole brain cell atlas in human and NHP

Brain Region(s) of Interest

Name
ventral group of lateral nucleus
mediodorsal nucleus of thalamus
septal nuclei
islands of Calleja
shell of nucleus accumbens
core of nucleus accumbens
lateral nuclear complex of thalamus
hindbrain (rhombencephalon)
Ventral pallidus
basal nucleus of Meynert
olfactory tubercle
anterior amygdaloid area
lateral hemisphere, anterior lobe portion
vermis, flocculonodular lobe portion (nodulus)
presubicular cortex (presubiculum)
inferior olive
head of caudate
tail of caudate
basolateral nuclear group
superior colliculus
posteroventral putamen
intralaminar nuclear complex
hypothalamus
lateral hemisphere, posterior lobe portion
subicular cortex
midbrain (mesencephalon)
dentate area (dentate gyrus)
external segment of globus pallidus
body of caudate
pulvinar of thalamus
reticular nucleus of thalamus
corticomedial nuclear group
posterior nuclear complex of thalamus
bed nucleus of stria terminalis
subiculum
lateral nucleus
subgenual (subcallosal) division of MFC (area 25)
hippocampal proper
laterodorsal portion of STH
paravermis, anterior lobe portion
primary visual cortex (striate cortex, area V1/17)
cerebellar deep nuclei
vermis, anterior lobe portion
putamen
internal segment of globus pallidus
posterior group of intralaminar nuclei
medial geniculate nuclei
pyramidal part of medulla oblongata
anterior nuclear complex of thalamus
lateral hemisphere, flocculonodular lobe portion
paravermis, posterior lobe portion
lateroventral portion of STH
lateral geniculate nucleus
entorhinal cortex
pons
fastigial (medial) nucleus
amygdaloid complex
central lateral nucleus of the thalamus
medial nuclear complex of thalamus
amygdalohippocampal transition area
substantia innominata
dentate (lateral) nucleus
myelencephalon (medulla oblongata)
substantia nigra, reticular part
vermis, posterior lobe portion

Parent Collections

Collection ID Name Type Short Name Submission Status
nemo:col-ddp8buz BICAN__MetaCumulative__2026-01-15__HMBA__aibs__nuclei__10X_genomics_multiome__rhesus_macaque__demultiplexed_fastq__open__no_restriction collection
nemo:col-ow59b0f BICAN-2026-01-RR-SCO collection BICAN-2026-01-RR-SCO

Child Collections

Collection ID Name Type Short Name Submission Status
nemo:col-454kjz0 BICAN__Snapshot__2026-01-15__HMBA__aibs__nuclei__10xMultiome_ATACseq__rhesus_macaque__demultiplexed_fastq__open__no_restriction files BICAN__Snapshot__2026-01-15__HMBA__aibs__nuclei__10xMultiome_ATACseq__rhesus_macaque__demultiplexed_fastq__open__no_restriction
nemo:col-fz04hoy BICAN__Snapshot__2026-01-15__HMBA__aibs__nuclei__10xMultiome_RNAseq__rhesus_macaque__demultiplexed_fastq__open__no_restriction files BICAN__Snapshot__2026-01-15__HMBA__aibs__nuclei__10xMultiome_RNAseq__rhesus_macaque__demultiplexed_fastq__open__no_restriction

Documentation