Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from rhesus macaque brain (BICAN-2026-01-RR-SCO MetaSnapshot)

Program

bican

Collection Type

Static

Keywords

Rapid Release 2026

As part of the BRAIN Initiative Cell Atlas Network, single nuclei from rhesus monkey were assayed using the 10X Genomics Multiome platform. (BICAN-2026-01-RR-SCO MetaSnapshot)

Data citation: Dataset: Trygve Bakken, Darren Bertagnolli, Tamara Casper, Anish Bhaswanth Chakka, Rushil Chakrabarty, Michael Clark, Nick Dee, Rebecca Ferrer, Yuanyuan Fu, Aaron Garcia, Jessica Gloe, Jeff Goldy, Junitta Guzman, Daniel Hirschstein, Windy Ho, Rebecca Hodge, Katelyn James, Nelson Johansen, Danielle L. Jones, Kathryn Jordan, Matthew Jungert, Madhav Kannan, Inkar Kapen, Lauren Kruse, Changkye Lee, Boaz P. Levi, Rachel McCue, Beagan Nguy, Nicholas Peña, Trangthanh Pham, Elliot Phillips, Nadiya V. Shapovalova, Kimberly A. Smith, Cassandra Sobieski, Michael Tieu, Amy Torkelson, Alex Tran, Jingyi Xie, Zizhen Yao, Dan Yuan, Hongkui Zeng, Ed Lein (2024) Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from rhesus macaque brain [Dataset]. Available from: https://assets.nemoarchive.org/nemo:col-3kyvdj3
Funding agency: NIMH
Grant numbers: UM1MH130981
Access: open
License: No license listed

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Download BDBag https://data.nemoarchive.org/bdbags/BICAN/BICAN-2026-01-RR-SCO/col-3kyvdj3__BICAN__MetaSnapshot__2026-01-15__HMBA__aibs__nuclei__10X_genomics_multiome__rhesus_macaque__demultiplexed_fastq__open__no_restriction.tgz 14,344 files 51,824.77 GB

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Anatomical Regions

ventral group of lateral nucleus
mediodorsal nucleus of thalamus
septal nuclei
islands of Calleja
shell of nucleus accumbens
core of nucleus accumbens
lateral nuclear complex of thalamus
hindbrain (rhombencephalon)
Ventral pallidus
basal nucleus of Meynert
olfactory tubercle
anterior amygdaloid area
lateral hemisphere, anterior lobe portion
vermis, flocculonodular lobe portion (nodulus)
presubicular cortex (presubiculum)
inferior olive
head of caudate
tail of caudate
basolateral nuclear group
superior colliculus
posteroventral putamen
intralaminar nuclear complex
hypothalamus
lateral hemisphere, posterior lobe portion
subicular cortex
midbrain (mesencephalon)
dentate area (dentate gyrus)
external segment of globus pallidus
body of caudate
pulvinar of thalamus
reticular nucleus of thalamus
corticomedial nuclear group
posterior nuclear complex of thalamus
bed nucleus of stria terminalis
subiculum
lateral nucleus
subgenual (subcallosal) division of MFC (area 25)
hippocampal proper
laterodorsal portion of STH
paravermis, anterior lobe portion
primary visual cortex (striate cortex, area V1/17)
cerebellar deep nuclei
vermis, anterior lobe portion
putamen
internal segment of globus pallidus
posterior group of intralaminar nuclei
medial geniculate nuclei
pyramidal part of medulla oblongata
anterior nuclear complex of thalamus
lateral hemisphere, flocculonodular lobe portion
paravermis, posterior lobe portion
lateroventral portion of STH
lateral geniculate nucleus
entorhinal cortex
pons
fastigial (medial) nucleus
amygdaloid complex
central lateral nucleus of the thalamus
medial nuclear complex of thalamus
amygdalohippocampal transition area
substantia innominata
dentate (lateral) nucleus
myelencephalon (medulla oblongata)
substantia nigra, reticular part
vermis, posterior lobe portion

Taxa

rhesus macaque

Projects this collection belongs to

nemo:prj-t8d9ty5

Functionally guided adult whole brain cell atlas in human and NHP

Assays, Modalities & Techniques

Assays: multiome; chromatin multiome; transcriptome
Modalities: multimodal
Techniques: 10X genomics multiome;atac-seq 10X genomics multiome;rnaseq

Child collections

nemo:col-454kjz0

Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from rhesus macaque brain (BICAN-2026-01-RR-SCO Snapshot ATAC)
nemo:col-fz04hoy

Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from rhesus macaque brain (BICAN-2026-01-RR-SCO Snapshot RNA)

Parent collections

nemo:col-ddp8buz

Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from rhesus macaque brain (MetaCumulative)
collection
nemo:col-ow59b0f

BICAN Rapid Release Inventory: Single cell transcriptomics and epigenomics (BICAN-2026-01-RR-SCO)
collection

Associated publications

No publications linked yet.

URL Protocols

View protocol

Contributors

No contributors listed for Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from rhesus macaque brain (BICAN-2026-01-RR-SCO MetaSnapshot) collection.

Cross-archive links

No cross-archive links listed for this collection.