Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from human brain (MetaCumulative)
Program
bican
Collection Type
Dynamic
Keywords
Rapid Release
As part of the BRAIN Initiative Cell Atlas Network, single nuclei from humans were assayed using the 10X Genomics Multiome platform.
Download URLs
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Browse HTTP server https://data.nemoarchive.org/bican/grant/HMBA/aibs/multimodal/nuclei/10xMultiome_ATACseq/human/demultiplexed_fastqRaw HTTP
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Browse HTTP server https://data.nemoarchive.org/bican/grant/HMBA/aibs/multimodal/nuclei/10xMultiome_RNAseq/human/demultiplexed_fastqRaw HTTP
Anatomical Regions
- medial division of centromedian nucleus of thalamus
- dorsal subdivision of BNSTlc
- shell of nucleus accumbens
- core of nucleus accumbens
- rostral presubiculum
- layer III of piriform cortex
- pontine nucleus
- magnocellular (medial) division of MD
- medial (posterior) entorhinal cortex
- nucleus of the field of Forel
- rostral subiculum
- lateral habenular nucleus
- head of caudate
- tail of caudate
- stratum lacunosum-moleculare of uncal CA2
- caudal division of central lateral nucleus
- red nucleus
- intermediate division of lateral nucleus
- multiform (lateral) division of MD
- stratum pyramidale of rostral CA3
- posteroventral putamen
- stratum pyramidale of rostral CA1
- anteroventral nucleus of thalamus
- temporal claustrum
- zona incerta
- midbrain (mesencephalon)
- endopiriform nucleus
- subparaventricular zone
- venrtral subdivision of CoP
- parvocellular (central) division of MD
- Dorsal claustrum
- external segment of globus pallidus
- body of caudate
- reticular nucleus of thalamus
- anterior nucleus of pulvinar
- caudal division of ventral posterior lateral nucleus
- amiculum of the olive
- periventricular nucleus, supraoptic portion
- bed nucleus of stria terminalis
- pre-Edinger-Westphal nucleus
- stratum lacunosum-moleculare of uncal CA1
- layer 6 of DLG
- limitans nucleus
- stratum pyramidale of uncal CA1
- rostral division of ventral posterior lateral nucleus
- pregeniculate nucleus
- lateral posterior nucleus of thalamus
- putamen
- internal segment of globus pallidus
- anterior hypothalamic nucleus
- polyform layer of rostral dentate gyrus
- periventricular area of thalamus
- lateral dorsal nucleus of thalamus
- dorsal medial geniculate nucleus
- dorsal subdivision of VLC
- ventral claustrum
- inferior olive, principal nucleus
- layer III of piriform-entorhinal-amygdaloid area
- paraventricular nucleus of hypothalamus
- amygdalohippocampal transition area
- myelencephalon (medulla oblongata)
- dorsal (magnocellular) division of basolateral nucleus
Taxa
human
Projects this collection belongs to
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Functionally guided adult whole brain cell atlas in human and NHP
Assays, Modalities & Techniques
Child collections
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Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from human brain (BICAN-2024-09-RR-SCO MetaSnapshot)
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Human and Mammalian Brain Atlas: Multiome analysis of single nuclei from human brain (BICAN-2026-01-RR-SCO MetaSnapshot)
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BICAN__MetaSnapshot__2026-09-25__HMBA__aibs__nuclei__10X_genomics_multiome__human__demultiplexed_fastq__open__no_restriction
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