NeMO Identifier: Collection

NeMO ID: nemo:col-ckphx51

  • Collection Name: BICAN__MetaCumulative__2026-01-15__HMBA__aibs__nuclei__10X_genomics_multiome__human__demultiplexed_fastq__open__no_restriction
  • Short Name:
  • Programs: bican

COLLECTION METADATA

  • Description:

  • This is a BICAN Cumulative collection that was created as part of the Rapid Release 2026-01-15

  • Collection Type: Dynamic
  • Taxa: human
  • Assays: multiome; chromatin , multiome; transcriptome
  • Anatomical Regions: medial division of centromedian nucleus of thalamus , dorsal subdivision of BNSTlc , shell of nucleus accumbens , core of nucleus accumbens , rostral presubiculum , layer III of piriform cortex , pontine nucleus , magnocellular (medial) division of MD , medial (posterior) entorhinal cortex , nucleus of the field of Forel , rostral subiculum , lateral habenular nucleus , head of caudate , tail of caudate , stratum lacunosum-moleculare of uncal CA2 , caudal division of central lateral nucleus , red nucleus , intermediate division of lateral nucleus , multiform (lateral) division of MD , stratum pyramidale of rostral CA3 , posteroventral putamen , stratum pyramidale of rostral CA1 , anteroventral nucleus of thalamus , temporal claustrum , zona incerta , midbrain (mesencephalon) , endopiriform nucleus , subparaventricular zone , venrtral subdivision of CoP , parvocellular (central) division of MD , Dorsal claustrum , external segment of globus pallidus , body of caudate , reticular nucleus of thalamus , anterior nucleus of pulvinar , caudal division of ventral posterior lateral nucleus , amiculum of the olive , periventricular nucleus, supraoptic portion , bed nucleus of stria terminalis , pre-Edinger-Westphal nucleus , stratum lacunosum-moleculare of uncal CA1 , layer 6 of DLG , limitans nucleus , stratum pyramidale of uncal CA1 , rostral division of ventral posterior lateral nucleus , pregeniculate nucleus , lateral posterior nucleus of thalamus , putamen , internal segment of globus pallidus , anterior hypothalamic nucleus , polyform layer of rostral dentate gyrus , periventricular area of thalamus , lateral dorsal nucleus of thalamus , dorsal medial geniculate nucleus , dorsal subdivision of VLC , ventral claustrum , inferior olive, principal nucleus , layer III of piriform-entorhinal-amygdaloid area , paraventricular nucleus of hypothalamus , amygdalohippocampal transition area , myelencephalon (medulla oblongata) , dorsal (magnocellular) division of basolateral nucleus
  • Modalities: multimodal
  • Techniques: 10X genomics multiome;atac-seq , 10X genomics multiome;rnaseq
  • Specimen Type:
  • Keywords:
  • Contact:
  • Grant Numbers: UM1MH130981
  • Funding Agency: NIMH
  • URL Protocol:
  • Data Access: open

Project(s) this Collection Belongs To

ID Title
nemo:prj-t8d9ty5 Functionally guided adult whole brain cell atlas in human and NHP

Brain Region(s) of Interest

Name
medial division of centromedian nucleus of thalamus
dorsal subdivision of BNSTlc
shell of nucleus accumbens
core of nucleus accumbens
rostral presubiculum
layer III of piriform cortex
pontine nucleus
magnocellular (medial) division of MD
medial (posterior) entorhinal cortex
nucleus of the field of Forel
rostral subiculum
lateral habenular nucleus
head of caudate
tail of caudate
stratum lacunosum-moleculare of uncal CA2
caudal division of central lateral nucleus
red nucleus
intermediate division of lateral nucleus
multiform (lateral) division of MD
stratum pyramidale of rostral CA3
posteroventral putamen
stratum pyramidale of rostral CA1
anteroventral nucleus of thalamus
temporal claustrum
zona incerta
midbrain (mesencephalon)
endopiriform nucleus
subparaventricular zone
venrtral subdivision of CoP
parvocellular (central) division of MD
Dorsal claustrum
external segment of globus pallidus
body of caudate
reticular nucleus of thalamus
anterior nucleus of pulvinar
caudal division of ventral posterior lateral nucleus
amiculum of the olive
periventricular nucleus, supraoptic portion
bed nucleus of stria terminalis
pre-Edinger-Westphal nucleus
stratum lacunosum-moleculare of uncal CA1
layer 6 of DLG
limitans nucleus
stratum pyramidale of uncal CA1
rostral division of ventral posterior lateral nucleus
pregeniculate nucleus
lateral posterior nucleus of thalamus
putamen
internal segment of globus pallidus
anterior hypothalamic nucleus
polyform layer of rostral dentate gyrus
periventricular area of thalamus
lateral dorsal nucleus of thalamus
dorsal medial geniculate nucleus
dorsal subdivision of VLC
ventral claustrum
inferior olive, principal nucleus
layer III of piriform-entorhinal-amygdaloid area
paraventricular nucleus of hypothalamus
amygdalohippocampal transition area
myelencephalon (medulla oblongata)
dorsal (magnocellular) division of basolateral nucleus

Child Collections

Collection ID Name Type Short Name Submission Status
nemo:col-vv7aidi BICAN__MetaSnapshot__2026-01-15__HMBA__aibs__nuclei__10X_genomics_multiome__human__demultiplexed_fastq__open__no_restriction collection BICAN__MetaSnapshot__2026-01-15__HMBA__aibs__nuclei__10X_genomics_multiome__human__demultiplexed_fastq__open__no_restriction

Documentation