NeMO Identifier: Collection

NeMO ID: nemo:col-myr9nn1

  • Collection Name: Developing Mouse Brain Atlas: Multiome analysis of single nuclei from embryonic and postnatal mouse brain (BICAN-2026-01-RR-SCO MetaSnapshot)
  • Short Name: zeng_10XMultiome_mouse_nuclei (BICAN-2026-01-RR-SCO MetaSnapshot)
  • Programs: bican

COLLECTION METADATA

  • Description:
  • Collection Type: Static
  • Taxa: house mouse
  • Assays: multiome; chromatin , multiome; transcriptome
  • Anatomical Regions: Hindbrain , Hippocampal formation , Isocortex , Cerebellum , Hypothalamus , Cerebral nuclei , Medulla , Olfactory areas , Midbrain , Thalamus , Cortical subplate
  • Modalities: multimodal
  • Techniques: 10X genomics multiome;atac-seq , 10X genomics multiome;rnaseq
  • Specimen Type:
  • Keywords: BICAN , Rapid Release , 2026
  • Contact:
  • Grant Numbers: U01MH130962
  • Funding Agency: NIMH
  • URL Protocol: Protocol
  • Data Access: open

Project(s) this Collection Belongs To

ID Title
nemo:prj-ggc1k9k Comprehensive single-cell atlas of the developing mouse brain

Brain Region(s) of Interest

Name
Hindbrain
Hippocampal formation
Isocortex
Cerebellum
Hypothalamus
Cerebral nuclei
Medulla
Olfactory areas
Midbrain
Thalamus
Cortical subplate

Parent Collections

Collection ID Name Type Short Name Submission Status
nemo:col-iefmnby Developing Mouse Brain Atlas: Multiome analysis of single nuclei from embryonic and postnatal mouse brain (MetaCumulative) collection zeng_10XMultiome_mouse_nuclei (MetaCumulative)
nemo:col-ow59b0f BICAN Rapid Release Inventory: Single cell transcriptomics and epigenomics (BICAN-2026-01-RR-SCO) collection BICAN-2026-01-RR-SCO

Child Collections

Collection ID Name Type Short Name Submission Status
nemo:col-0onu0di Developing Mouse Brain Atlas: Multiome analysis of single nuclei from embryonic and postnatal mouse brain (BICAN-2026-01-RR-SCO Snapshot ATAC) files zeng_10XMultiome_mouse_nuclei (BICAN-2026-01-RR-SCO Snapshot ATAC)
nemo:col-o29aa39 Developing Mouse Brain Atlas: Multiome analysis of single nuclei from embryonic and postnatal mouse brain (BICAN-2026-01-RR-SCO Snapshot RNA) files zeng_10XMultiome_mouse_nuclei (BICAN-2026-01-RR-SCO Snapshot RNA)

Documentation


Data Citation:

Dataset: Darren Bertagnolli, Tamara Casper, Anish Bhaswanth Chakka, Rushil Chakrabarty, Michael Clark, Nick Dee, Rebecca Ferrer, Yuan Gao, Jessica Gloe, Jeff Goldy, Junitta Guzman, Windy Ho, Katelyn James, Matthew Jungert, Madhav Kannan, Changkyu Lee, Ruiyang Liu, Rachel McCue, Beagan Nguy, Chelsea M Pagan, Trangthanh Pham, Elliot Phillips, Kimberly A. Smith, Emma D. Thomas, Michael Tieu, Amy Torkelson, Alex Tran, Cindy T. J. van Velthoven, Zizhen Yao, Hongkui Zeng, Paola Arlotta (2024) Developing Mouse: Multiome analysis of single nuclei from embryonic and postnatal mouse brain [Dataset]. Available from https://assets.nemoarchive.org/nemo:col-myr9nn1