NeMO Identifier: Collection

NeMO ID: nemo:col-tqreqdu

  • Collection Name: Developmental Multiomics: Chromatin Conformation and Cytosine DNA methylation (mC) analysis of single nuclei from human brain (BICAN-2026-01-RR-SCO Snapshot)
  • Short Name: luo_m3Cseq_human_nuclei (BICAN-2026-01-RR-SCO Snapshot)
  • Programs: bican

COLLECTION METADATA

  • Description:

  • As part of the BRAIN Initiative Cell Atlas Network, single nuclei from human brains were assayed using snm3C-seq. (BICAN-2026-01-RR-SCO Snapshot)

  • Collection Type: Static
  • Taxa: human
  • Assays: methylation
  • Anatomical Regions: occipitotemporal (fusiform) gyrus, temporal part , dorsolateral prefrontal cortex , subiculum , hippocampal proper , inferior temporal gyrus , middle temporal gyrus , caudate nucleus , amygdaloid complex , dentate area (dentate gyrus) , cingulate neocortex , ventrolateral prefrontal cortex , frontal neocortex , postcentral gyrus , temporal neocortex , insular neocortex , globus pallidus , thalamus , orbital frontal cortex , lateral ventricles , putamen
  • Modalities: epigenome
  • Techniques: m3c-seq
  • Specimen Type: nuclei
  • Keywords: BICAN , Rapid Release , 2026
  • Contact:
  • Grant Numbers: U01MH130995
  • Funding Agency: NIMH
  • URL Protocol:
  • Data Access: open

Project(s) this Collection Belongs To

ID Title
nemo:prj-vwtwc3r Spatiotemporal epigenomic and chromosomal architectural cell atlas of developing human brains

Brain Region(s) of Interest

Name
occipitotemporal (fusiform) gyrus, temporal part
dorsolateral prefrontal cortex
subiculum
hippocampal proper
inferior temporal gyrus
middle temporal gyrus
caudate nucleus
amygdaloid complex
dentate area (dentate gyrus)
cingulate neocortex
ventrolateral prefrontal cortex
frontal neocortex
postcentral gyrus
temporal neocortex
insular neocortex
globus pallidus
thalamus
orbital frontal cortex
lateral ventricles
putamen

Parent Collections

Collection ID Name Type Short Name Submission Status
nemo:col-puakzh8 Developmental Multiomics: Chromatin Conformation and Cytosine DNA methylation (mC) analysis of single nuclei from human brain (Cumulative) collection luo_m3Cseq_human_nuclei (Cumulative)
nemo:col-ow59b0f BICAN Rapid Release Inventory: Single cell transcriptomics and epigenomics (BICAN-2026-01-RR-SCO) collection BICAN-2026-01-RR-SCO

Documentation


Data Citation:

Dataset: Matthew G Heffel, Heng Xu, Oier Pastor Alonso, Xinzhe Li, Runjia Li, Yi Zhang, Joonho Kum, Min-Jen Tsai, Zachary von Behren, Eleazar Eskin, Bogdan Pasaniuc, Jason Ernst, Bogdan Bintu, Quan Zhu, Eran Mukamel, Mercedes F Paredes, Chongyuan Luo (2026) Developmental Multiomics: Chromatin Conformation and Cytosine DNA methylation (mC) analysis of single nuclei from human brain [Dataset]. Available from: https://assets.nemoarchive.org/nemo:col-tqreqdu