NeMO Identifier: Collection

NeMO ID: nemo:dat-4j3fen2

  • Collection Name: Human Basal Ganglia Astrocyte Diversity Reflects Evolutionary and Circuit-Level Specialization
  • Short Name:
  • Programs: biccn , bican

COLLECTION METADATA

  • Description:
  • Collection Type: Dynamic
  • Taxa: human , rhesus macaque , house mouse
  • Assays: spatial transcriptome , multiome; chromatin , multiome; transcriptome
  • Anatomical Regions: basal ganglia
  • Modalities: multimodal
  • Techniques: 10X genomics multiome;atac-seq , 10X genomics multiome;rnaseq
  • Specimen Type:
  • Keywords: Basal Ganglia , Astrocyte heterogeneity , Regional specialization , Astrocyte-synapse interactions , Striatal astrocyte , multi-omics integrative analysis
  • Contact:
  • Grant Numbers: 1U01MH114812, UM1MH130981
  • Funding Agency: NIMH
  • URL Protocol:
  • Data Access: open
  • Data License: CC BY 4.0

Data associated with this Publication

DOI Year PubMed ID Journal Vol:Page

Contributors

Name Organization ORCID
Trygve E Bakken Allen Institute 0000-0003-3373-7386
Joseph Ecker Salk Institute for Biological Studies 0000-0001-5799-5895
Ed S Lein Allen Institute 0000-0001-9012-6552
Bing Ren University of California, San Diego 0000-0002-5435-1127
Song-Lin Ding Allen Institute 0000-0002-7072-5272
Madeleine Hewitt Allen Institute for Brain Science 0000-0002-4387-327X
Nelson J Johansen Allen Institute for Brain Science 0000-0002-4436-969X
Yuanyuan Fu Allen Institute for Brain Science 0000-0001-5934-6573
Matthew Schmitz Allen Institute for Brain Science 0000-0002-6177-8161
Lei Chang University of California, San Deigo 0000-0002-2606-3347
Yang Xie University of California, San Deigo 0000-0002-7453-6786
Morgan Wirthlin
Meghan Turner
John Mich
Brian Long
Jennie Close
Inkar Kapen
Aaron D Garcia
Stephanie Seeman
Boaz P Levi
Rebecca D Hodge
Niklas Kempynck
Wubin Ding
Kai Li

Project(s) this Collection Belongs To

ID Title
nemo:grn-eg23ca0 A multimodal atlas of human brain cell types
nemo:prj-t8d9ty5 Functionally guided adult whole brain cell atlas in human and NHP

Brain Region(s) of Interest

Name
basal ganglia

Documentation

PLEASE CITE NeMO DATA AS FOLLOWS:

Ament SA, Adkins RS, Carter R, Chrysostomou E, Colantuoni C, Crabtree J, Creasy HH, Degatano K, Felix V, Gandt P, Garden GA, Giglio M, Herb BR, Khajouei F, Kiernan E, McCracken C, McDaniel K, Nadendla S, Nickel L, Olley D, Orvis J, Receveur JP, Schor M, Sonthalia S, Tickle TL, Way J, Hertzano R, Mahurkar AA, White OR. The Neuroscience Multi-Omic Archive: a BRAIN Initiative resource for single-cell transcriptomic and epigenomic data from the mammalian brain. Nucleic Acids Res. 2023 Jan 6;51(D1):D1075-D1085. doi: 10.1093/nar/gkac962. PMID: 36318260; PMCID: PMC9825473