NeMO Identifier: Grant

NeMo Grant ID: nemo:grn-eg23ca0

    • Grant Description:
    • Grant Title: A multimodal atlas of human brain cell types
    • Grant Short Name: u01_lein
    • Grant Number: 1U01MH114812
    • Funding Agency: NIMH

      GRANT METADATA

    • Assays: transcriptome , spatial transcriptome , multiome; chromatin , multiome; transcriptome
    • Modalities: transcriptome , multimodal
    • Techniques: smart-seq v4 , 10x chromium 3' v3 sequencing , pacbio long read sequencing , patch-seq , 10x chromium 3' v2 sequencing , 10X genomics multiome;atac-seq , 10X genomics multiome;rnaseq
    • Contact: Ed Lein

    Taxa

    Name CV Term ID
    human NCBI:txid9606
    gray short-tailed opossum NCBI:txid13616
    nine-banded armadillo NCBI:txid9361
    Bolivian squirrel monkey NCBI:txid27679
    pig-tailed macaque NCBI:txid9545
    Arctic ground squirrel NCBI:txid9999
    green monkey NCBI:txid60711
    small-eared galago NCBI:txid30611
    common tree shrew NCBI:txid9395
    domestic cat NCBI:txid9685
    pig NCBI:txid9823
    chimpanzee NCBI:txid9598
    rhesus macaque NCBI:txid9544
    Chacma baboon NCBI:txid36229
    western gorilla NCBI:txid9593
    Ma's night monkey NCBI:txid37293
    Norway rat NCBI:txid10116
    domestic ferret NCBI:txid9669
    rabbit NCBI:txid9986
    squirrel monkeys NCBI:txid9520
    macaques NCBI:txid9539

    Collection(s) Associated with this Grant

    Collection ID Short Name
    nemo:col-3xdcngg human_specialized_types
    nemo:col-8q3jj5f lein_evo_10x_arcticgroundsquirrel
    nemo:col-nf8y9aa lein_evo_10x_armadillo
    nemo:col-bukzpw1 lein_evo_10x_baboon
    nemo:col-wnb3cf0 lein_evo_10x_cat
    nemo:col-d9bt4xz lein_evo_10x_chimp
    nemo:col-q4xu0oq lein_evo_10x_coyote
    nemo:col-tzuse1q lein_evo_10x_ferret
    nemo:col-syx1yqf lein_evo_10x_galago
    nemo:col-kftve55 lein_evo_10x_gorilla
    nemo:col-46feo8d lein_evo_10x_greenmonkey
    nemo:col-t1zruit lein_evo_10x_nemestrina
    nemo:col-77u67pv lein_evo_10x_opposum
    nemo:col-wgi613w lein_evo_10x_owlmonkey
    nemo:col-3m1t1fj lein_evo_10x_pig
    nemo:col-r4vocyw lein_evo_10x_rabbit
    nemo:col-argjjr5 lein_evo_10x_rat
    nemo:col-3hsntsm lein_evo_10x_rhesus
    nemo:col-imng24s lein_evo_10x_squirrel_monkey
    nemo:col-6zthizt lein_evo_10x_treeshrew
    nemo:col-5p093mi lein_evo_Iso_Seq_arctic_ground_squirrel
    nemo:col-jc5k5po lein_evo_Iso_Seq_armadillo
    nemo:col-fhh6ms9 lein_evo_Iso_Seq_greenmonkey
    nemo:col-q3q4h0t lein_evo_Iso_Seq_nemestrina
    nemo:col-2hq70g3 lein_evo_Iso_Seq_opossum
    nemo:col-582mti6 lein_evo_Iso_Seq_squirrel_monkey
    nemo:col-e3gka8n lein_human_pseq_t
    nemo:col-7hxd1pf lein_L5_pseq_t
    nemo:col-zvndpgy lein_L5_pseq_t_2
    nemo:col-7vfy8un lein_sn_10xv2
    nemo:col-ond7r4e lein_sn_10xv3
    nemo:col-qi6xfyw lein_sn_hippocampus
    nemo:col-i1136an lein_sn_SSv4
    nemo:col-k4itueb mop_evo_pseq_hu_t
    nemo:col-drws8h2 mop_evo_pseq_t
    nemo:col-rakg2ee mop_evo_pseq_t_2
    nemo:dat-u3d7n6h
    nemo:dat-4j3fen2

    Labs

    Name Relation
    Lein Associated Lab
    Mansvelder Associated Lab
    Linnarsson Associated Lab

    Contributors

    Name Organization ORCID
    Trygve Bakken Allen Institute 0000-0003-3373-7386
    Tim Dolbeare Allen Institute
    Rebecca Hodge Allen Institute 0000-0002-5784-9668
    Nik Jorstad Allen Institute 0000-0001-7906-9470
    Brian Kalmbach Allen Institute 0000-0003-3136-8097
    Suman Kattar Allen Institute
    Lauren Kruse Allen Institute
    Ed Lein Allen Institute 0000-0001-9012-6552
    Sten Linnarsson Karolinska Institute 0000-0002-3491-3444
    Huib Mansvelder Vrije Universiteit Amsterdam 0000-0003-1365-5340
    Jeremy Miller Allen Institute

    Documentation

    PLEASE CITE NeMO DATA AS FOLLOWS:

    Ament SA, Adkins RS, Carter R, Chrysostomou E, Colantuoni C, Crabtree J, Creasy HH, Degatano K, Felix V, Gandt P, Garden GA, Giglio M, Herb BR, Khajouei F, Kiernan E, McCracken C, McDaniel K, Nadendla S, Nickel L, Olley D, Orvis J, Receveur JP, Schor M, Sonthalia S, Tickle TL, Way J, Hertzano R, Mahurkar AA, White OR. The Neuroscience Multi-Omic Archive: a BRAIN Initiative resource for single-cell transcriptomic and epigenomic data from the mammalian brain. Nucleic Acids Res. 2023 Jan 6;51(D1):D1075-D1085. doi: 10.1093/nar/gkac962. PMID: 36318260; PMCID: PMC9825473