NeMO Identifier: Collection

NeMO ID: nemo:dat-u3d7n6h

  • Collection Name: Cross-species Consensus Atlas of the Basal Ganglia
  • Short Name:
  • Programs: biccn , bican

COLLECTION METADATA

  • Description:
  • Collection Type: Dynamic
  • Taxa: white-tufted-ear marmoset , human , rhesus macaque , house mouse
  • Assays: spatial transcriptome , multiome; chromatin , multiome; transcriptome
  • Anatomical Regions: basal ganglia
  • Modalities: multimodal
  • Techniques: 10X genomics multiome;atac-seq , 10X genomics multiome;rnaseq
  • Specimen Type:
  • Keywords: Basal Ganglia , comparative genomics , comparative epigenomics , deep learning , DNA sequence modeling , multi-omics integrative , Medium Spiny Neurons , Dopaminergic Neurons
  • Contact:
  • Grant Numbers: 1U01MH114812, UM1MH130981
  • Funding Agency: NIMH
  • URL Protocol:
  • Data Access: open
  • Data License: CC BY 4.0

Data associated with this Publication

DOI Year PubMed ID Journal Vol:Page

Contributors

Name Organization ORCID
Nelson J Johansen Allen Institute for Brain Science ORCID iD icon 0000-0002-4436-969X
Yuanyuan Fu Allen Institute for Brain Science ORCID iD icon 0000-0001-5934-6573
Morgan Wirthlin
Madeleine Hewitt Allen Institute for Brain Science ORCID iD icon 0000-0002-4387-327X
Meghan Turner
Brian Long
Jennie Close
Xiao-Ping Liu
Matthew Schmitz Allen Institute for Brain Science ORCID iD icon 0000-0002-6177-8161
Shu Dan
Michael DeBerardine
Inkar Kapen
Aaron D Garcia
Anna Marie Yanny
Alida Avola
Samuel T Barlow
Darren Bertagnolli Allen Institute for Brain Science ORCID iD icon 0000-0002-6626-1567
Ashwin Bhandiwad
Agata Budzillo
Victor Eduardo Nieto Caballero
Lakme Caceres
Anish Bhaswanth Chakka Allen Institute for Brain Science ORCID iD icon 0000-0002-1095-1817
Rushil Chakrabarty Allen Institute for Brain Science ORCID iD icon 0000-0003-1722-8557
Scott Daniel
Song-Lin Ding Allen Institute ORCID iD icon 0000-0002-7072-5272
Rebecca Ferrer Allen Institute for Brain Science
Jeff Goldy Allen Institute for Brain Science ORCID iD icon 0000-0001-5140-6922
Nathan Guilford
Junitta Guzman Allen Institute for Brain Science ORCID iD icon 0000-0001-8217-9232
Daniel Hirschstein
Katelyn James Allen Institute for Brain Science
Danielle Lynne Jones
Mckaila Leytze
Arena Manning
Delissa McMillen
Chris Morrison
Beagan Nguy Allen Institute for Brain Science ORCID iD icon 0000-0001-9577-5260
Victoria Omstead
Sven Otto
Nick Pena
Trangthanh Pham Allen Institute for Brain Science ORCID iD icon 0000-0002-4738-5062
Christine Rimorin
Dana Rocha
Raymond Sanchez
Stephanie Seeman
Nadiya V Shapovalova
Naz Taskin
Michael Tieu Allen Institute for Brain Science
Amy Torkelson Allen Institute for Brain Science ORCID iD icon 0000-0002-9465-4202
Yongqi Wang
Rachel Dalley
Elysha Fiabane
Nathan Gouwens
Boaz P Levi
Staci Sorensen
Brian Lee Allen Institute for Brain Science ORCID iD icon 0000-0002-3210-5638
Brian Kalmbach Allen Institute ORCID iD icon 0000-0003-3136-8097
David Osumi-Sutherland
Lydia Ng
Tyler Mollenkopf
Jeremy Miller Allen Institute
Tanya Daigle
Jonathan T Ting Allen Institute ORCID iD icon 0000-0001-8266-0392
Kimberly Smith
Fenna Krienen Harvard University ORCID iD icon 0000-0002-1400-6820
Rebecca D Hodge
Ed S Lein Allen Institute ORCID iD icon 0000-0001-9012-6552
Trygve E Bakken Allen Institute ORCID iD icon 0000-0003-3373-7386

Project(s) this Collection Belongs To

ID Title
nemo:grn-eg23ca0 A multimodal atlas of human brain cell types
nemo:prj-t8d9ty5 Functionally guided adult whole brain cell atlas in human and NHP

Brain Region(s) of Interest

Name
basal ganglia

Parent Collections

Collection ID Name Type Short Name Submission Status
nemo:col-n6b0x7w BICAN Basal Ganglia package collection BICAN Basal Ganglia package ongoing

Documentation