NeMO Identifier: Collection

NeMO ID: nemo:dat-u3d7n6h

  • Collection Name: Cross-species Consensus Atlas of the Basal Ganglia
  • Short Name:
  • Programs: biccn , bican

COLLECTION METADATA

  • Description:
  • Collection Type: Dynamic
  • Taxa: white-tufted-ear marmoset , human , rhesus macaque , house mouse
  • Assays: spatial transcriptome , multiome; chromatin , multiome; transcriptome
  • Anatomical Regions: basal ganglia
  • Modalities: multimodal
  • Techniques: 10X genomics multiome;atac-seq , 10X genomics multiome;rnaseq
  • Specimen Type:
  • Keywords: Basal Ganglia , comparative genomics , comparative epigenomics , deep learning , DNA sequence modeling , multi-omics integrative , Medium Spiny Neurons , Dopaminergic Neurons
  • Contact:
  • Grant Numbers: 1U01MH114812, UM1MH130981
  • Funding Agency: NIMH
  • URL Protocol:
  • Data Access: open
  • Data License: CC BY 4.0

Data associated with this Publication

DOI Year PubMed ID Journal Vol:Page

Contributors

Name Organization ORCID
Nelson J Johansen Allen Institute for Brain Science 0000-0002-4436-969X
Yuanyuan Fu Allen Institute for Brain Science 0000-0001-5934-6573
Morgan Wirthlin
Madeleine Hewitt Allen Institute for Brain Science 0000-0002-4387-327X
Meghan Turner
Brian Long
Jennie Close
Xiao-Ping Liu
Matthew Schmitz Allen Institute for Brain Science 0000-0002-6177-8161
Shu Dan
Michael DeBerardine
Inkar Kapen
Aaron D Garcia
Anna Marie Yanny
Alida Avola
Samuel T Barlow
Darren Bertagnolli Allen Institute for Brain Science 0000-0002-6626-1567
Ashwin Bhandiwad
Agata Budzillo
Victor Eduardo Nieto Caballero
Lakme Caceres
Anish Bhaswanth Chakka Allen Institute for Brain Science 0000-0002-1095-1817
Rushil Chakrabarty Allen Institute for Brain Science 0000-0003-1722-8557
Scott Daniel
Song-Lin Ding Allen Institute 0000-0002-7072-5272
Rebecca Ferrer Allen Institute for Brain Science
Jeff Goldy Allen Institute for Brain Science 0000-0001-5140-6922
Nathan Guilford
Junitta Guzman Allen Institute for Brain Science 0000-0001-8217-9232
Daniel Hirschstein
Katelyn James Allen Institute for Brain Science
Danielle Lynne Jones
Mckaila Leytze
Arena Manning
Delissa McMillen
Chris Morrison
Beagan Nguy Allen Institute for Brain Science 0000-0001-9577-5260
Victoria Omstead
Sven Otto
Nick Pena
Trangthanh Pham Allen Institute for Brain Science 0000-0002-4738-5062
Christine Rimorin
Dana Rocha
Raymond Sanchez
Stephanie Seeman
Nadiya V Shapovalova
Naz Taskin
Michael Tieu Allen Institute for Brain Science
Amy Torkelson Allen Institute for Brain Science 0000-0002-9465-4202
Yongqi Wang
Rachel Dalley
Elysha Fiabane
Nathan Gouwens
Boaz P Levi
Staci Sorensen
Brian Lee Allen Institute for Brain Science 0000-0002-3210-5638
Brian Kalmbach Allen Institute 0000-0003-3136-8097
David Osumi-Sutherland
Lydia Ng
Tyler Mollenkopf
Jeremy Miller Allen Institute
Tanya Daigle
Jonathan T Ting Allen Institute 0000-0001-8266-0392
Kimberly Smith
Fenna Krienen Harvard University 0000-0002-1400-6820
Rebecca D Hodge
Ed S Lein Allen Institute 0000-0001-9012-6552
Trygve E Bakken Allen Institute 0000-0003-3373-7386

Project(s) this Collection Belongs To

ID Title
nemo:grn-eg23ca0 A multimodal atlas of human brain cell types
nemo:prj-t8d9ty5 Functionally guided adult whole brain cell atlas in human and NHP

Brain Region(s) of Interest

Name
basal ganglia

Parent Collections

Collection ID Name Type Short Name Submission Status
nemo:col-n6b0x7w BICAN Basal Ganglia package collection BICAN Basal Ganglia package ongoing

Documentation