NeMO Identifier: Collection

NeMO ID: nemo:dat-u3d7n6h

  • Collection Name: Cross-species Consensus Atlas of the Basal Ganglia
  • Short Name:
  • Programs: biccn , bican

COLLECTION METADATA

  • Description:
  • Collection Type: Dynamic
  • Taxa: white-tufted-ear marmoset , human , rhesus macaque , house mouse
  • Assays: spatial transcriptome , multiome; chromatin , multiome; transcriptome
  • Anatomical Regions: basal ganglia
  • Modalities: multimodal
  • Techniques: 10X genomics multiome;atac-seq , 10X genomics multiome;rnaseq
  • Specimen Type:
  • Keywords: Basal Ganglia , comparative genomics , comparative epigenomics , deep learning , DNA sequence modeling , multi-omics integrative , Medium Spiny Neurons , Dopaminergic Neurons
  • Contact:
  • Grant Numbers: 1U01MH114812, UM1MH130981
  • Funding Agency: NIMH
  • URL Protocol:
  • Data Access: open
  • Data License: CC BY 4.0

Data associated with this Publication

DOI Year PubMed ID Journal Vol:Page

Contributors

Name Organization ORCID
Trygve E Bakken Allen Institute 0000-0003-3373-7386
Brian Kalmbach Allen Institute 0000-0003-3136-8097
Fenna Krienen Harvard University 0000-0002-1400-6820
Ed S Lein Allen Institute 0000-0001-9012-6552
Jeremy Miller Allen Institute
Jonathan T Ting Allen Institute 0000-0001-8266-0392
Song-Lin Ding Allen Institute 0000-0002-7072-5272
Darren Bertagnolli Allen Institute for Brain Science 0000-0002-6626-1567
Anish Bhaswanth Chakka Allen Institute for Brain Science 0000-0002-1095-1817
Rushil Chakrabarty Allen Institute for Brain Science 0000-0003-1722-8557
Jeff Goldy Allen Institute for Brain Science 0000-0001-5140-6922
Junitta Guzman Allen Institute for Brain Science 0000-0001-8217-9232
Beagan Nguy Allen Institute for Brain Science 0000-0001-9577-5260
Trangthanh Pham Allen Institute for Brain Science 0000-0002-4738-5062
Amy Torkelson Allen Institute for Brain Science 0000-0002-9465-4202
Madeleine Hewitt Allen Institute for Brain Science 0000-0002-4387-327X
Michael Tieu Allen Institute for Brain Science
Rebecca Ferrer Allen Institute for Brain Science
Katelyn James Allen Institute for Brain Science
Nelson J Johansen Allen Institute for Brain Science 0000-0002-4436-969X
Yuanyuan Fu Allen Institute for Brain Science 0000-0001-5934-6573
Matthew Schmitz Allen Institute for Brain Science 0000-0002-6177-8161
Morgan Wirthlin
Meghan Turner
Alida Avola
Samuel T Barlow
Victor Eduardo Nieto Caballero
Scott Daniel
Nathan Guilford
Danielle Lynne Jones
Mckaila Leytze
Arena Manning
Chris Morrison
Victoria Omstead
Sven Otto
Nick Pena
Christine Rimorin
Dana Rocha
Raymond Sanchez
Nadiya V Shapovalova
Naz Taskin
Yongqi Wang
Elysha Fiabane
Nathan Gouwens
Staci Sorensen
Brian Lee Allen Institute for Brain Science 0000-0002-3210-5638
David Osumi-Sutherland
Tyler Mollenkopf
Brian Long
Jennie Close
Xiao-Ping Liu
Shu Dan
Michael DeBerardine
Inkar Kapen
Aaron D Garcia
Anna Marie Yanny
Ashwin Bhandiwad
Agata Budzillo
Lakme Caceres
Daniel Hirschstein
Delissa McMillen
Stephanie Seeman
Rachel Dalley
Boaz P Levi
Lydia Ng
Tanya Daigle
Kimberly Smith
Rebecca D Hodge

Project(s) this Collection Belongs To

ID Title
nemo:grn-eg23ca0 A multimodal atlas of human brain cell types
nemo:prj-t8d9ty5 Functionally guided adult whole brain cell atlas in human and NHP

Brain Region(s) of Interest

Name
basal ganglia

Documentation

PLEASE CITE NeMO DATA AS FOLLOWS:

Ament SA, Adkins RS, Carter R, Chrysostomou E, Colantuoni C, Crabtree J, Creasy HH, Degatano K, Felix V, Gandt P, Garden GA, Giglio M, Herb BR, Khajouei F, Kiernan E, McCracken C, McDaniel K, Nadendla S, Nickel L, Olley D, Orvis J, Receveur JP, Schor M, Sonthalia S, Tickle TL, Way J, Hertzano R, Mahurkar AA, White OR. The Neuroscience Multi-Omic Archive: a BRAIN Initiative resource for single-cell transcriptomic and epigenomic data from the mammalian brain. Nucleic Acids Res. 2023 Jan 6;51(D1):D1075-D1085. doi: 10.1093/nar/gkac962. PMID: 36318260; PMCID: PMC9825473