NeMO Identifier: Collection

NeMO ID: nemo:col-a06sk1r

  • Collection Name: Developing Mouse Brain Atlas: RNAseq analysis of single cells from developing mouse brain (10X v4) (BICAN-2026-01-RR-SCO Snapshot)
  • Short Name: zeng_10Xv4_mouse_cells (BICAN-2026-01-RR-SCO Snapshot)
  • Programs: bican

COLLECTION METADATA

  • Description:
  • Collection Type: Static
  • Taxa: house mouse
  • Assays: transcriptome
  • Anatomical Regions: Hindbrain , Hippocampal formation , Olfactory areas , Isocortex , Cerebellum , Midbrain , Hypothalamus , Cerebral nuclei , Thalamus , Cortical subplate
  • Modalities: transcriptome
  • Techniques: 10x Chromium 3' v4 sequencing
  • Specimen Type: cells
  • Keywords: BICAN , Rapid Release , 2026
  • Contact:
  • Grant Numbers: U01MH130962
  • Funding Agency: NIMH
  • URL Protocol:
  • Data Access: open

Project(s) this Collection Belongs To

ID Title
nemo:prj-ggc1k9k Comprehensive single-cell atlas of the developing mouse brain

Brain Region(s) of Interest

Name
Hindbrain
Hippocampal formation
Olfactory areas
Isocortex
Cerebellum
Midbrain
Hypothalamus
Cerebral nuclei
Thalamus
Cortical subplate

Parent Collections

Collection ID Name Type Short Name Submission Status
nemo:col-wb3bmua Developing Mouse Brain Atlas: RNAseq analysis of single cells from developing mouse brain (10X v4) (Cumulative) collection zeng_10Xv4_mouse_cells (Cumulative)
nemo:col-ow59b0f BICAN Rapid Release Inventory: Single cell transcriptomics and epigenomics (BICAN-2026-01-RR-SCO) collection BICAN-2026-01-RR-SCO

Documentation


Data Citation:

Dataset: Darren Bertagnolli, Tamara Casper, Anish Bhaswanth Chakka, Rushil Chakrabarty, Michael Clark, Nick Dee, Rebecca Ferrer, Yuan Gao, Jessica Gloe, Jeff Goldy, Junitta Guzman, Windy Ho, Katelyn James, Matthew Jungert, Madhav Kannan, Changkyu Lee, Ruiyang Liu, Rachel McCue, Beagan Nguy, Chelsea M Pagan, Trangthanh Pham, Elliot Phillips, Kimberly A. Smith, Emma D. Thomas, Michael Tieu, Amy Torkelson, Alex Tran, Cindy T. J. van Velthoven, Zizhen Yao, Hongkui Zeng, Paola Arlotta (2024) Developing Mouse: RNAseq of single cells from embryonic and postnatal mouse brain (10x v4) [Dataset]. Available from: https://assets.nemoarchive.org/nemo:col-a06sk1r