NeMO Identifier: Collection

NeMO ID: nemo:col-9v0xd24

  • Collection Name: Developing Mouse Brain Atlas: RNAseq of single cells from embryonic and postnatal mouse brain (10X v3.1 HT) (BICAN-2026-01-RR-SCO Snapshot)
  • Short Name: zeng_10Xv3.1-HT_mouse_cells (BICAN-2026-01-RR-SCO Snapshot)
  • Programs: bican

COLLECTION METADATA

  • Description:
  • Collection Type: Static
  • Taxa: house mouse
  • Assays: HT; transcriptome
  • Anatomical Regions: Hindbrain , Hippocampal formation , Cerebral nuclei , Olfactory areas , Isocortex , Cerebellum , Hypothalamus , Midbrain , Thalamus , Cortical subplate
  • Modalities: transcriptome
  • Techniques: 10xV3.1_HT
  • Specimen Type: cells
  • Keywords: BICAN , Rapid Release , 2026
  • Contact:
  • Grant Numbers: U01MH130962
  • Funding Agency: NIMH
  • URL Protocol: Protocol
  • Data Access: open

Project(s) this Collection Belongs To

ID Title
nemo:prj-ggc1k9k Comprehensive single-cell atlas of the developing mouse brain

Brain Region(s) of Interest

Name
Hindbrain
Hippocampal formation
Cerebral nuclei
Olfactory areas
Isocortex
Cerebellum
Hypothalamus
Midbrain
Thalamus
Cortical subplate

Parent Collections

Collection ID Name Type Short Name Submission Status
nemo:col-tvfhknr Developing Mouse Brain Atlas: RNAseq of single cells from embryonic and postnatal mouse brain (10X v3.1 HT) (Cumulative) collection zeng_10Xv3.1-HT_mouse_cells (Cumulative)
nemo:col-ow59b0f BICAN Rapid Release Inventory: Single cell transcriptomics and epigenomics (BICAN-2026-01-RR-SCO) collection BICAN-2026-01-RR-SCO

Documentation


Data Citation:

Dataset: Darren Bertagnolli, Tamara Casper, Anish Bhaswanth Chakka, Rushil Chakrabarty, Michael Clark, Nick Dee, Rebecca Ferrer, Yuan Gao, Jessica Gloe, Jeff Goldy, Junitta Guzman, Windy Ho, Katelyn James, Matthew Jungert, Madhav Kannan, Changkyu Lee, Ruiyang Liu, Rachel McCue, Beagan Nguy, Chelsea M Pagan, Trangthanh Pham, Elliot Phillips, Kimberly A. Smith, Emma D. Thomas, Michael Tieu, Amy Torkelson, Alex Tran, Cindy T. J. van Velthoven, Zizhen Yao, Hongkui Zeng, Paola Arlotta (2024) Developing Mouse Brain Atlas: RNAseq of single cells from embryonic and postnatal mouse brain (10X v3.1 HT) [Dataset]. Available from https://assets.nemoarchive.org/nemo:col-9v0xd24