Developing Mouse Brain Atlas: RNAseq of single cells from embryonic and postnatal mouse brain (10X v3.1 HT) (BICAN-2026-01-RR-SCO Snapshot)

Program
bican
Collection Type
Static
Specimen Type
cells
Keywords
Rapid Release 2026

As part of the BRAIN Initiative Cell Atlas Network, single cells from mouse were assayed by 10X chromium 3' v3.1 HT sequencing. (BICAN-2026-01-RR-SCO Snapshot)

Data citation
Dataset: Darren Bertagnolli, Tamara Casper, Anish Bhaswanth Chakka, Rushil Chakrabarty, Michael Clark, Nick Dee, Rebecca Ferrer, Yuan Gao, Jessica Gloe, Jeff Goldy, Junitta Guzman, Windy Ho, Katelyn James, Matthew Jungert, Madhav Kannan, Changkyu Lee, Ruiyang Liu, Rachel McCue, Beagan Nguy, Chelsea M Pagan, Trangthanh Pham, Elliot Phillips, Kimberly A. Smith, Emma D. Thomas, Michael Tieu, Amy Torkelson, Alex Tran, Cindy T. J. van Velthoven, Zizhen Yao, Hongkui Zeng, Paola Arlotta (2024) Developing Mouse Brain Atlas: RNAseq of single cells from embryonic and postnatal mouse brain (10X v3.1 HT) [Dataset]. Available from https://assets.nemoarchive.org/nemo:col-9v0xd24
Funding agency
NIMH
Grant numbers
U01MH130962
Access
open
License
No license listed

Download URLs

  • Download BDBag https://data.nemoarchive.org/bdbags/BICAN/BICAN-2026-01-RR-SCO/col-9v0xd24__BICAN__Snapshot__2026-01-15__BICAN_Dev_Mouse__aibs__cells__10xV3.1_HT__house_mouse__demultiplexed_fastq__open__no_restriction.tgz 2,528 files 12,079.91 GB
    Raw BDBag

Anatomical Regions

  • Hindbrain
  • Hippocampal formation
  • Cerebral nuclei
  • Olfactory areas
  • Isocortex
  • Cerebellum

Taxa

house mouse

Projects this collection belongs to

  • nemo:prj-ggc1k9k
    Comprehensive single-cell atlas of the developing mouse brain

Assays, Modalities & Techniques

Assays
HT; transcriptome
Modalities
transcriptome
Techniques
10xV3.1_HT

Child collections

No child collections listed for Developing Mouse Brain Atlas: RNAseq of single cells from embryonic and postnatal mouse brain (10X v3.1 HT) (BICAN-2026-01-RR-SCO Snapshot) collection.

Parent collections

  • nemo:col-tvfhknr
    Developing Mouse Brain Atlas: RNAseq of single cells from embryonic and postnatal mouse brain (10X v3.1 HT) (Cumulative)
    collection
  • nemo:col-ow59b0f
    BICAN Rapid Release Inventory: Single cell transcriptomics and epigenomics (BICAN-2026-01-RR-SCO)
    collection
  • nemo:col-i17zvqh
    BICAN-2026-09-RR-SCO
    collection

Associated publications

No publications linked yet.

URL Protocols

Contributors

No contributors listed for Developing Mouse Brain Atlas: RNAseq of single cells from embryonic and postnatal mouse brain (10X v3.1 HT) (BICAN-2026-01-RR-SCO Snapshot) collection.

Cross-archive links

No cross-archive links listed for this collection.

Documentation & resources